Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e04
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   214   1e-56
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  214 bits (522), Expect = 1e-56
 Identities = 110/209 (52%), Positives = 138/209 (66%), Gaps = 1/209 (0%)
 Frame = -2

Query: 797 FGHPEVYILILPGFGIISHIISQERGKXETFXXXXXXXXXXXXXXXGFIV*AHHIFTVGI 618
           FGHPEVYILI+P FG++SHII     K   F               G +V +HH+FTVG+
Sbjct: 245 FGHPEVYILIMPAFGVVSHIIPSLAHKP-IFGKEGMLWAMLSIALLGLMVWSHHLFTVGL 303

Query: 617 DIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGV 441
           D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGV
Sbjct: 304 DVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGV 363

Query: 440 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFT 261
           IL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ 
Sbjct: 364 ILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWI 422

Query: 260 IFIGVNITFFPQHFLGLAGIPRRYSDYPD 174
           +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 423 LFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 309 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 181
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,007
Number of Sequences: 5004
Number of extensions: 39952
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)