Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e03
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 31 0.15
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 29 0.82
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 1.9
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 27 2.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 3.3
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 4.4
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 27 4.4
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 5.8
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 26 7.7
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 7.7
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 419 LVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 240
++ P HK+ + SV +N +P+ + +H K TI LC K++ + ++++
Sbjct: 501 IISPKKSQHKLYPNPVVESV--FNDVPYSEIDSQLHTIKSTIAARLCGKSHIPLVGHMDE 558
Query: 239 CTK 231
TK
Sbjct: 559 QTK 561
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.1 bits (62), Expect = 0.82
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 483 FTNIHQIFKNVLGWHSENFNFFKFL 557
+T+ + F+++L WH+E FN + L
Sbjct: 191 YTSKRKCFRSILSWHNETFNIWTHL 215
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 464 KQSDIHNRN-TRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKE 288
KQS NR+ T N +V P++ L N F YN + H+ +++I R + +E
Sbjct: 254 KQSYYANRSSTINNAMVVAPVTLLKNWENEF-------YNWLGHERIHVYIARCAEDFQE 306
Query: 287 HLCNKAY-YKVNDYLEDCT 234
NK Y + Y CT
Sbjct: 307 FTSNKTYSIIITGYETVCT 325
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 587 YNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVV 411
Y ++ R+KFKE+KV + P+++ + + K +E +QS I+ NK LVV
Sbjct: 26 YREYTIRRTRDKFKELKVESDPAKF-EQGIKDSEKLLEIIQRQSIIN--GMYNKRNLVV 81
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/87 (25%), Positives = 43/87 (49%)
Frame = -2
Query: 635 DVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQS 456
+VE + Q R + I + +S+R K +++ + S+ I +L ++EE +
Sbjct: 9 NVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENI--DLRTTAINLEE--QLE 64
Query: 455 DIHNRNTRNKHKLVVPMSRLHKIRNSF 375
+ N N NK KL ++R H+ ++F
Sbjct: 65 TVQNENEENKTKLAALLNRFHEETDNF 91
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 521 SQYIFENLMYVRKHIEEFPKQSD 453
+Q IF +L++ +HIEEF + S+
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASE 363
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 695 YFSYFHSVMSYGILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPS 519
+ +Y V I LWGNA D+ +L + + N+ ++ + E K I V P+
Sbjct: 175 HIAYMVFVEMAQISLWGNATDLS---LLTNLSYEELQNLQGQKVVEESQKNILVNDFPT 230
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.8
Identities = 24/112 (21%), Positives = 44/112 (39%)
Frame = -2
Query: 539 KVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSV 360
KVL Q +F N + K EE P ++ + H L + L +S L +
Sbjct: 827 KVLEEKGQAVFRNRLSKLKWTEEKPSSKNVLEA-LKKVHVLCGKKASLGSTGSSISQLLL 885
Query: 359 RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE*VARSRH 204
+L P+ + + ++ + +K++Y N + D W R +H
Sbjct: 886 KLLADTPYLKEGVEVYLKSFLLWIQEPSKSHYNANIF-HDFINWGAQQRLKH 936
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 5.8
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Frame = -2
Query: 716 ADTARLVYFSYFHSVMSYG--ILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKE 543
ADT+R Y F V+ IL +A D E + + + S E R F
Sbjct: 145 ADTSRKAYDKEFKKVVEASDVILYVLDARDPEGT---RSKDVERQVLASSAEEKRLIFVI 201
Query: 542 IKVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLS 363
K+ +PS+ + + + Y+R P +S + N+ KH+ S + + S S
Sbjct: 202 NKIDLVPSEVLNKWVTYLRNFFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYS 261
Query: 362 VR 357
+
Sbjct: 262 AK 263
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 84 TLSFLPILLRTEASSCELAVVLLT 13
TLS+ P+L R ++ SC ++++T
Sbjct: 18 TLSWFPLLFRKQSYSCAKGLIVIT 41
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 287 HLCNKAYYKVNDYLEDCTKWE 225
HL K+YY N ++ C WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,143
Number of Sequences: 5004
Number of extensions: 65819
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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