Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e03
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314...    30   2.0  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    29   3.5  
10_08_0361 + 17207657-17207701,17208850-17209773                       28   8.1  
02_01_0679 - 5048653-5051394                                           28   8.1  

>06_01_0446 -
           3147007-3147111,3147215-3147367,3147445-3147497,
           3147670-3147988,3148754-3148892,3149141-3149222,
           3149711-3149789,3150135-3150314,3150811-3151070,
           3151192-3151294,3151469-3151609,3151797-3151870,
           3153536-3153635,3154108-3154167,3154381-3154428,
           3154519-3154610,3155023-3155071,3155810-3155879,
           3156408-3156505,3157288-3157347
          Length = 754

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 638 ADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKV--LTMPSQYIFENLMYVRKHIEEFP 465
           AD+E I +  K A RA+Y++H + S RE  K++ +      S  +   L Y      +F 
Sbjct: 113 ADMEFISMGMKVATRAVYSLH-KTSTREHIKKVALRNCNAISAEVLCELRYNLPRTYKFH 171

Query: 464 KQSDI 450
           KQ+++
Sbjct: 172 KQNEV 176


>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 533 LTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVV 411
           +  PS++  E+L  + + +   P++  + N N + KH+ V+
Sbjct: 816 MEFPSEFCNESLPVISRDLHPIPEERVVENFNVQEKHEAVI 856


>10_08_0361 + 17207657-17207701,17208850-17209773
          Length = 322

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 500 LMYVRKHIEEFPKQSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNK 345
           LMY  + +E+    S    RN +  H LV P  +LH   N  G  ++ L  K
Sbjct: 129 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETK 180


>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 350 NKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 240
           +KIP D+  +H  +    +KE L NK Y  V D + D
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWD 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,090
Number of Sequences: 37544
Number of extensions: 373508
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)