Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e03
(843 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC046475-1|AAH46475.1| 247|Homo sapiens similar to zinc finger ... 34 0.74
BC012070-1|AAH12070.1| 539|Homo sapiens ZBTB7B protein protein. 32 2.3
AL451085-29|CAI13266.1| 539|Homo sapiens zinc finger and BTB do... 32 2.3
AF007833-1|AAC51847.1| 539|Homo sapiens kruppel-related zinc fi... 31 5.2
BC065503-1|AAH65503.1| 551|Homo sapiens ZNF480 protein protein. 30 9.1
BC018783-1|AAH18783.1| 516|Homo sapiens zinc finger protein 480... 30 9.1
AY512662-1|AAR97581.1| 516|Homo sapiens zinc finger protein 480... 30 9.1
AY442325-1|AAS01767.1| 687|Homo sapiens organic anion transport... 30 9.1
AY257470-1|AAP81211.1| 687|Homo sapiens liver-specific organic ... 30 9.1
AK096559-1|BAC04817.1| 516|Homo sapiens protein ( Homo sapiens ... 30 9.1
AK096442-1|BAC04792.1| 366|Homo sapiens protein ( Homo sapiens ... 30 9.1
AF401642-1|AAQ03085.1| 640|Homo sapiens liver-specific organic ... 30 9.1
>BC046475-1|AAH46475.1| 247|Homo sapiens similar to zinc finger
protein 595 protein.
Length = 247
Score = 33.9 bits (74), Expect = 0.74
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = -2
Query: 611 QKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTR 432
Q R++ NMH+ E + +K+LT P ++ + K+ + +
Sbjct: 35 QSRSLNEHKNMHTGEKPYTCEECVKLLTNPQALLYTGAFILNKNFTNVKNAA----KPLL 90
Query: 431 NKHKLVVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYK 261
N H L+ R+H + C + + + H ++ +IH +K+ K C A+Y+
Sbjct: 91 NPHPLI--NKRIHTGEKPYTCEECGKAFYRSSHLTEHKNIHTGEKSYKCEECGNAFYR 146
>BC012070-1|AAH12070.1| 539|Homo sapiens ZBTB7B protein protein.
Length = 539
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -2
Query: 494 YVRKHIEEFPKQSDIHN-RNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQN-L 321
++R H E P ++ R TRN KL + M R H + C +D++N +
Sbjct: 364 HMRTHTGEKPFACEVCGVRFTRND-KLKIHM-RKHTGERPYSCPHCPARFLHSYDLKNHM 421
Query: 320 HIHRFKKTIKEHLCNKAYYKVNDYLE 243
H+H + + HLC+KA+ K D+L+
Sbjct: 422 HLHTGDRPYECHLCHKAFAK-EDHLQ 446
>AL451085-29|CAI13266.1| 539|Homo sapiens zinc finger and BTB
domain containing 7B protein.
Length = 539
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -2
Query: 494 YVRKHIEEFPKQSDIHN-RNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQN-L 321
++R H E P ++ R TRN KL + M R H + C +D++N +
Sbjct: 364 HMRTHTGEKPFACEVCGVRFTRND-KLKIHM-RKHTGERPYSCPHCPARFLHSYDLKNHM 421
Query: 320 HIHRFKKTIKEHLCNKAYYKVNDYLE 243
H+H + + HLC+KA+ K D+L+
Sbjct: 422 HLHTGDRPYECHLCHKAFAK-EDHLQ 446
>AF007833-1|AAC51847.1| 539|Homo sapiens kruppel-related zinc
finger protein hcKrox protein.
Length = 539
Score = 31.1 bits (67), Expect = 5.2
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -2
Query: 494 YVRKHIEEFPKQSDIHN-RNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQN-L 321
++R H E P ++ R TRN KL + M R H + C +D++N +
Sbjct: 364 HMRTHTGEKPFACEVCGVRFTRND-KLKIHM-RKHTGERPYSCPHCPARFLHSYDLKNHM 421
Query: 320 HIHRFKKTIKEHLCNKAYYKVNDYLE 243
H+H + + HLC++A+ K D+L+
Sbjct: 422 HLHTGDRPYECHLCHRAFAK-EDHLQ 446
>BC065503-1|AAH65503.1| 551|Homo sapiens ZNF480 protein protein.
Length = 551
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 428 KHKL-VVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVN 255
+HKL + R+H + C +++N+I H ++ IH +K K + C KA+ +++
Sbjct: 481 RHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRIS 540
>BC018783-1|AAH18783.1| 516|Homo sapiens zinc finger protein 480
protein.
Length = 516
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 428 KHKL-VVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVN 255
+HKL + R+H + C +++N+I H ++ IH +K K + C KA+ +++
Sbjct: 446 RHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRIS 505
>AY512662-1|AAR97581.1| 516|Homo sapiens zinc finger protein 480
protein.
Length = 516
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 428 KHKL-VVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVN 255
+HKL + R+H + C +++N+I H ++ IH +K K + C KA+ +++
Sbjct: 446 RHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRIS 505
>AY442325-1|AAS01767.1| 687|Homo sapiens organic anion transporter
LST-3b protein.
Length = 687
Score = 30.3 bits (65), Expect = 9.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 388 YEIHSGVCLC--ACTTKSHMMFRTYIYIGLRKLLKNICAIKLTIKSMII*KIAQSGNELL 215
Y H G C ACT KS Y+Y ++ L +CA+ LT S+++ +I Q + L
Sbjct: 517 YSAHLGECPRDDACTRKS------YVYFVIQVLDAFLCAVGLTSYSVLVIRIVQPELKAL 570
Query: 214 APG 206
A G
Sbjct: 571 AIG 573
>AY257470-1|AAP81211.1| 687|Homo sapiens liver-specific organic
anion transporter 3TM12 protein.
Length = 687
Score = 30.3 bits (65), Expect = 9.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 388 YEIHSGVCLC--ACTTKSHMMFRTYIYIGLRKLLKNICAIKLTIKSMII*KIAQSGNELL 215
Y H G C ACT KS Y+Y ++ L +CA+ LT S+++ +I Q + L
Sbjct: 517 YSAHLGECPRDDACTRKS------YVYFVIQVLDAFLCAVGLTSYSVLVIRIVQPELKAL 570
Query: 214 APG 206
A G
Sbjct: 571 AIG 573
>AK096559-1|BAC04817.1| 516|Homo sapiens protein ( Homo sapiens
cDNA FLJ39240 fis, clone OCBBF2008041, moderately
similar to ZINC FINGER PROTEIN 43. ).
Length = 516
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 428 KHKL-VVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVN 255
+HKL + R+H + C +++N+I H ++ IH +K K + C KA+ +++
Sbjct: 446 RHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRIS 505
>AK096442-1|BAC04792.1| 366|Homo sapiens protein ( Homo sapiens
cDNA FLJ39123 fis, clone NTONG2007020, moderately
similar to ZINC FINGER PROTEIN 83. ).
Length = 366
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 428 KHKL-VVPMSRLHKIRNSFGCLSV-RLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVN 255
+HKL + R+H + C +++N+I H ++ IH +K K + C KA+ +++
Sbjct: 296 RHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRIS 355
>AF401642-1|AAQ03085.1| 640|Homo sapiens liver-specific organic
anion transporter LST-3 protein.
Length = 640
Score = 30.3 bits (65), Expect = 9.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 388 YEIHSGVCLC--ACTTKSHMMFRTYIYIGLRKLLKNICAIKLTIKSMII*KIAQSGNELL 215
Y H G C ACT KS Y+Y ++ L +CA+ LT S+++ +I Q + L
Sbjct: 470 YSAHLGECPRDDACTRKS------YVYFVIQVLDAFLCAVGLTSYSVLVIRIVQPELKAL 523
Query: 214 APG 206
A G
Sbjct: 524 AIG 526
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,098,518
Number of Sequences: 237096
Number of extensions: 2296095
Number of successful extensions: 12021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12014
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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