Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e03
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016434-1|AAB65875.2|  313|Caenorhabditis elegans Serpentine re...    29   5.5  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    28   9.5  

>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
 Frame = -2

Query: 560 REKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKQSDIHNRNTRNKHKLVVPMSR-LHKIR 384
           +    + + + + +++  EN+    + I EF +Q D+ NRN +N  K+   + +   KIR
Sbjct: 84  KHNLDDAREILIANKWKLENIEESYEKISEFQRQLDL-NRNNQNNDKIYEAIKKEKEKIR 142

Query: 383 NSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 240
                 +V   N+   D +N+  + F+ T++ H  N    ++ D++E+
Sbjct: 143 K-----NVYERNEQLRDFKNIP-YGFQPTLELH--NLMQDQIEDFIEE 182


>AF016434-1|AAB65875.2|  313|Caenorhabditis elegans Serpentine
           receptor, class sx protein17 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +1

Query: 424 CLFLVFLLCMSDCLGNSSICLRTYIKFSKMYWDGIVRTLISLNFSL 561
           CL ++  +  + CL +  IC++  ++F++ + D   R++I   F++
Sbjct: 46  CLIMISTIAHTICLVSELICVKLKLRFTQTHRDECFRSVIVYMFAV 91


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 690 KVN*TSRVRVC*HSNFFYCVCC 755
           KV+    VRVC H + FYC+ C
Sbjct: 690 KVSDQENVRVCVHCSAFYCINC 711


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 437 TRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPHDVQNLHIHRFKKTIKEHLCNKAYY 264
           T+    +V P +  H+   S G L+ +    + H++Q L  H F  TI ++L    YY
Sbjct: 277 TKGSTFVVTPENFCHQAVGSIG-LTKKTAGCLNHELQMLGFHLFPWTILKYLIMPIYY 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,834
Number of Sequences: 27780
Number of extensions: 375622
Number of successful extensions: 986
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)