Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d24
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0102 - 826827-827411 63 3e-10
10_08_0647 - 19576672-19577259 58 6e-09
04_04_0826 - 28453018-28453284,28453286-28453594 44 1e-04
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 33 0.28
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 33 0.37
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 32 0.64
04_01_0477 - 6221990-6223224,6227722-6228817 30 2.0
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 2.0
>03_01_0102 - 826827-827411
Length = 194
Score = 62.9 bits (146), Expect = 3e-10
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = -2
Query: 636 PEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRT 457
PEFL+ ++S + N+ G+ +++G+ G GL R G K+R
Sbjct: 46 PEFLFQEESLAQRRSWGENLTY-YTGIGYLSGAVAGAAVGLRDAARNAE-PGDTAKIRAN 103
Query: 456 QVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGL 277
+V+N G G TLG+I Y+ I G+ +RD++D N+ A TG ++++ +G
Sbjct: 104 RVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGP 163
Query: 276 RS 271
RS
Sbjct: 164 RS 165
>10_08_0647 - 19576672-19577259
Length = 195
Score = 58.4 bits (135), Expect = 6e-09
Identities = 40/155 (25%), Positives = 70/155 (45%)
Frame = -2
Query: 735 GDILNKNEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGM 556
GD +K N +PY ++ Y PEFL+ ++S + N+ G+
Sbjct: 15 GDASGPGRRKYNPYHDLSTPY-SYQTLYDLPTSPEFLFQEESAAQRRSWGENLTY-YTGV 72
Query: 555 SFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCI 376
+++G+ G GL + A G K+R +V+N G G LG+I Y+ +
Sbjct: 73 GYLSGAVAGAALGL-RDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGM 131
Query: 375 ALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRS 271
+ RD++D N+ A TG ++++ +G RS
Sbjct: 132 ESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRS 166
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/134 (25%), Positives = 57/134 (42%)
Frame = -2
Query: 672 LNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRAT 493
++F Y PEFL+ +++ + ++ G ++ G G AGL +
Sbjct: 29 ISFRELYDLPTSPEFLFHEEALRSRRTCGEDLTF-YTGCGYLVGRAAGAAAGLKRAAEEA 87
Query: 492 TLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAAS 313
G+ K+R G G LG++A + I V LRD + ANT A
Sbjct: 88 E-RGESMKLRGQPRPQPCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGI 146
Query: 312 TTGIIYKSTSGLRS 271
TG +Y++ +G R+
Sbjct: 147 GTGALYRAAAGPRA 160
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 250 GSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCAACSRT 429
G+C H ++CA N TSG Y C ++ P P G V C N+ T
Sbjct: 332 GACHSNH---SKCA--NVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNSICGAGST 386
Query: 430 LLHNIINYLCPSHF 471
+ +Y C +F
Sbjct: 387 CKNTEGSYRCDCNF 400
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 32.7 bits (71), Expect = 0.37
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 3/160 (1%)
Frame = -2
Query: 738 FGDILNKNEQ-KNNQASANLSPYL-NFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPI 565
FG + K E+ K S S L +FD P E+ M + L
Sbjct: 184 FGSLFGKKEEEKKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSMERDPCPDRI-LDD 242
Query: 564 IGMSFMTGSGLGGMAGLYKGLRATTLAGQ-VGKVRRTQVVNYVMKQGTTTGCTLGIIASF 388
IG SF G+ G KGLR + + G + ++ + G C L F
Sbjct: 243 IGASFGMGAVGGSFFHFVKGLRNSPSGARFAGGMEGVRMNAPRVAGGFAVWCGL-----F 297
Query: 387 YSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 268
+C V+ +R KED N+ IA + TG I + GLR++
Sbjct: 298 SACDCALVS-VRQKEDPYNSIIAGAATGGILAARQGLRAV 336
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 195 SKAKYNRF*SNTCQEYIHNVMFVLGELCQRISW 97
S AKY RF N CQ+ + + VLG++ + +SW
Sbjct: 481 SHAKYYRFHVNECQQNSGDALKVLGKVSRTLSW 513
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 361 LASRQRR-HSKHFHSSLNHWYHLQKHIWSSFNGSWCSYR 248
LA RR H SL HWYH KH+ F+ + S+R
Sbjct: 212 LAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFR 250
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 690 ANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLY 511
AN S Y + +PR F +PD S + RS V +P I +F G GG +
Sbjct: 174 ANGSRYDGVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVR 233
Query: 510 K 508
K
Sbjct: 234 K 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,280
Number of Sequences: 37544
Number of extensions: 407592
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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