Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d24
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    65   5e-11
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   2.3  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    29   3.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    29   3.1  

>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 43/141 (30%), Positives = 65/141 (46%)
 Frame = -2

Query: 693 SANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGL 514
           S  ++PY+  DP      QP+++ P+     +   +   AL  IG +     G+G   G 
Sbjct: 72  SRQMTPYVQMDPSMFASQQPQYIMPEGG--VAGKGKFEFALGHIGWAVGGAFGVGCARGA 129

Query: 513 YKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTA 334
              L        VGK   T++VN  MK G+      G I   YS + +G+  +R  ED  
Sbjct: 130 LGELMNPETRKMVGKPWMTRMVNATMKHGSGFAQPSGAIVFMYSALEIGLRSVR-AEDEL 188

Query: 333 NTFIAASTTGIIYKSTSGLRS 271
           N F A + TG IY+S  GL++
Sbjct: 189 NGFGAGALTGAIYRSPHGLKA 209


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 482 PARVVALSPLYNPAIPPKP--EPVIKDIPMMGRATFDLLAVEA 604
           PA VVA +P + PA  P P   P+I   P +  A+ + L V A
Sbjct: 98  PAPVVAAAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA 140


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 355 SRQRRHSKHFHSSLNHWYHLQKHI 284
           SR     + FHSS+ + YHLQ HI
Sbjct: 138 SRSPSPKRDFHSSMRNQYHLQAHI 161


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 450 VNYVMKQGTTTGCTLGIIASFYSCIALGVTWL 355
           +NY+  QG+TTG T+ +I  FY    L + WL
Sbjct: 267 INYMQFQGSTTGSTVSLI--FYPWDVLKLYWL 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,811,106
Number of Sequences: 27780
Number of extensions: 369099
Number of successful extensions: 1113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)