Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d22
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0496 + 3939731-3939758,3940459-3942773                           27   4.0  
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482...    27   5.3  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    26   9.3  

>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 316 Y*LISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYFM 146
           Y  + F  R  +   Y    IF N+YW   +  S T +R S+N S    L +L  FM
Sbjct: 164 YYTLRFDDRYVLSLAYDGPDIF-NLYWPNPDQSSWTNYRISYNRSRSGVLDKLGKFM 219


>03_06_0250 +
           32645600-32646649,32647549-32647791,32648008-32648229,
           32648375-32648443,32650681-32650768,32651147-32651230,
           32651494-32651582,32651933-32652046,32652513-32652647,
           32652847-32653071
          Length = 772

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 325 WGIY*LISFIYRPFIKFLYTKNSIF 251
           +G++  ISFI  PFI FL+ + S F
Sbjct: 429 FGMFSKISFICVPFISFLHFEGSFF 453


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 176 YRRGIPAKPKKCCGKNVIFTPINIV 250
           Y R +    ++C G+ V FTP+ ++
Sbjct: 447 YNRAVMPAARRCLGRAVAFTPLQLM 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,486,928
Number of Sequences: 37544
Number of extensions: 98410
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)