Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d22
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               20   9.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.6  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 281 NERPVNKGYQLI 316
           NE P  K YQL+
Sbjct: 104 NEDPCEKAYQLV 115


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 173 EYRRGIPAKPKKCCGKNVIFTPIN 244
           ++  GIP   K     +VIF  IN
Sbjct: 134 QFGSGIPMGAKYLMDSDVIFVTIN 157


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +1

Query: 301 RISVNKSPNNCKYCS 345
           R    + P  C+YCS
Sbjct: 112 RTHTGEKPYQCEYCS 126


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 265 KNSIFYNIY 239
           KN+IFY +Y
Sbjct: 26  KNAIFYQVY 34


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 173 EYRRGIPAKPKKCCGKNVIFTPIN 244
           ++  GIP   K     +VIF  IN
Sbjct: 134 QFGSGIPMGAKYLMDSDVIFVTIN 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,362
Number of Sequences: 438
Number of extensions: 1618
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)