Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d21
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    36   0.038
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110...    33   0.20 
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    33   0.27 
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    32   0.62 
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076...    30   1.9  
03_05_0057 + 20350971-20351405                                         29   4.4  
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299...    29   5.8  

>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = -1

Query: 810 TQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQTP 631
           T+NR+ E+ +LF  +   R     S ILFLNK D+  +K+      + ++F +   YQ  
Sbjct: 221 TKNRMMETKELFDWVLKQRCFEKTSFILFLNKFDIFEKKIQKVPLSVCEWFKD---YQPI 277

Query: 630 TDMKPDPKDHPEVTRAKF 577
              K + +   E  + KF
Sbjct: 278 APGKQEVEHAYEFVKKKF 295


>10_01_0089 +
           1103841-1104152,1104809-1104946,1105527-1105631,
           1106403-1106577,1107124-1107398,1108222-1108391,
           1108508-1109084
          Length = 583

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 25/123 (20%), Positives = 53/123 (43%)
 Frame = -1

Query: 804 NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQTPTD 625
           N++  S DLF+ +  +        +L LNK D   EK+      + ++F +F+  +    
Sbjct: 441 NKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPLTVCEWFADFSPVRPHHT 500

Query: 624 MKPDPKDHPEVTRAKFFIREEFLRISTATGDGKHDCYAHFTCAVDTDNIQRVFNGCRNII 445
            +     H     A +++  +F  + ++  DG+   +   T A++   +   F   R ++
Sbjct: 501 SQTSLASH-----AYYYVAVKFKDLYSSVADGR-KLFVFQTKALERRTVDDAFRYIREVL 554

Query: 444 QRW 436
            RW
Sbjct: 555 -RW 556


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -1

Query: 813 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQT 634
           P  N++ +S DLF++       R +  +L LNK DL  EK+        ++F +F   +T
Sbjct: 721 PLVNKMIQSRDLFEATIRQPCFRDMPFVLVLNKFDLFEEKIGRVPLSTCEWFSDFCPLRT 780


>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 813 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQT 634
           P  N++ +S +LF++            +L LNK DL  EK+        ++F++F+  +T
Sbjct: 709 PLLNKMMQSKELFEATIRQPCFCDTPFVLVLNKYDLFEEKINRAPLTTCEWFNDFSPVRT 768


>12_02_0966 -
           24906361-24906958,24907084-24907250,24907403-24907650,
           24907824-24908001,24908196-24908372,24908459-24908563,
           24908633-24908770,24909757-24910836
          Length = 896

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 804 NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLE--DYFHEF 649
           N++ E+  LF+SI  +     +  +L L K D+L +K+  GKS L   D+F +F
Sbjct: 747 NKMMETRQLFESIALHPIFEQMDFLLLLTKFDILEQKI--GKSPLTSCDWFSDF 798


>03_05_0057 + 20350971-20351405
          Length = 144

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 805 EPAARVPGSVQEHLEQPVAADHLRHPVPQQAGPARREGAGGQVPARG 665
           EPA + P    +   +P  A H R P P +   A   G  G V   G
Sbjct: 21  EPAPKEPQQPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67


>04_04_1418 +
           33428527-33428895,33429206-33429280,33429697-33429978,
           33430058-33430205,33430309-33430388,33431238-33431318,
           33431416-33431514
          Length = 377

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = -1

Query: 795 RESLD--LFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQ----T 634
           + SLD  L   +WN  W+ T+S    L  +D +A ++     +LE    + A  +     
Sbjct: 252 KSSLDSHLLDLLWNKYWVNTLSSSPLLGNRDYVAGQIFDLADKLEQAEGQLAHSRYGMLM 311

Query: 633 PTDMKPDPKDHP--EVTR 586
           P+  K + ++ P  +VTR
Sbjct: 312 PSQRKKEQEESPLAKVTR 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,564,627
Number of Sequences: 37544
Number of extensions: 314086
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)