Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d15
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 35 0.089
07_03_0899 + 22421038-22422642 32 0.63
07_03_0898 - 22403337-22404950 31 1.5
01_03_0126 + 12741397-12743022 30 1.9
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160... 29 5.9
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 5.9
10_08_0374 - 17312430-17312513,17312794-17313029,17313081-173132... 28 7.8
07_03_0896 + 22373348-22374946 28 7.8
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323 28 7.8
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 34.7 bits (76), Expect = 0.089
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAEN 639
S ++G+++AP L++ E +P+ +FG+ G L+ PET + DT+ E
Sbjct: 458 SQASQMGAILAP---LVVVLGERVPFALFGVSGLVGGFLVFCLPETKNKPMYDTMAGLEE 514
Query: 638 ISK 630
K
Sbjct: 515 GEK 517
>07_03_0899 + 22421038-22422642
Length = 534
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 809 GRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
G +G +VAP L + +FG+ GL + PET +L DT+E E
Sbjct: 470 GVLGGVVAPMLVALGRERSYWSFGVFGLTVGCLGLFVTFLPETKGRRLSDTMEDEE 525
>07_03_0898 - 22403337-22404950
Length = 537
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 803 IGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
+G +VAP L + +FG+ GL + PET +L DT+E+ E
Sbjct: 462 LGGVVAPMLVALGRERSYWSFGVFGLAVGCLGLFVTWLPETKGRRLSDTMEEEE 515
>01_03_0126 + 12741397-12743022
Length = 541
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 803 IGSLVAPQTPLL---MTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
+G +VAP L T S + +FG+ GLL+ PET +L DT+E+ E
Sbjct: 466 LGGVVAPVLVALGRETTSYWSSSFGVFGLAVGCLGLLVTCLPETRGRRLSDTMEEEE 522
>12_01_0212 -
1605544-1605647,1605799-1605842,1606189-1606230,
1606306-1606394,1606477-1606521,1606801-1606845,
1606874-1606981,1607065-1607150,1607553-1607640,
1608185-1608385,1608790-1608865,1608951-1609000,
1609082-1609144,1609225-1609278,1609395-1609497,
1610010-1610050,1610654-1610685,1612086-1612224
Length = 469
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 43 ICFTN*YFITIKLNI*LSQMRKSRAQCFSTXLFNTLPG 156
IC T +FI +++ I L Q C S +FNTL G
Sbjct: 42 ICLTADFFILLQIVIKLYQYHHCSPSCTSWVIFNTLFG 79
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 433 RTAPSLVGRLHRSLLSRPQVTPNSANLSER 522
RT PS++G L +LSRP S NL+ER
Sbjct: 333 RTCPSMLGMLRDQILSRPS-RSFSKNLTER 361
>10_08_0374 -
17312430-17312513,17312794-17313029,17313081-17313261,
17313335-17313445,17313495-17313722,17313862-17313999,
17314159-17314375,17314452-17314564,17314919-17314921
Length = 436
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 220 DHPIYTPSL*QQLRCADYCGKLICRTGRLTDISYRYIRTILKYK 351
D P+ TP +Q + D+ G + TG LT + + I+K+K
Sbjct: 29 DKPVLTPKRDRQWQANDFGGNIRVPTGILTVLIKHFFPGIVKFK 72
>07_03_0896 + 22373348-22374946
Length = 532
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 803 IGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAEN 639
+G + AP L + +FG+ GL + PET + DT+E+ E+
Sbjct: 461 LGGVAAPMLVALGRERSFWSFGVFGLAVGCLGLFAVCLPETRGRSMSDTMEEEEH 515
>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
Length = 905
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 659 CLAALPSGFLVLEASVDQMYTPLCRKSGTEE 751
C+ LPS VL+ S + +Y PL ++ G +E
Sbjct: 531 CIPDLPSSVKVLDLSSNHLYGPLPQRLGAKE 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,499
Number of Sequences: 37544
Number of extensions: 323733
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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