Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d15
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 61 1e-09
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 61 1e-09
Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical ... 44 1e-04
U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 40 0.002
U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical pr... 40 0.002
U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical pr... 37 0.015
AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic catio... 37 0.015
AC090999-20|AAP46262.1| 132|Caenorhabditis elegans Hypothetical... 33 0.25
AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical... 33 0.25
Z81524-4|CAB04250.1| 528|Caenorhabditis elegans Hypothetical pr... 33 0.32
U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 7.0
U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 28 9.2
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 28 9.2
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAEN 639
SM+ G L+AP L ++ LP LI G+MA ++G+L PETL LP TIE AEN
Sbjct: 483 SMVAGSGLLLAPHIVNLGKIVKILPLLIMGLMALSAGILTFFLPETLGAPLPMTIEDAEN 542
Query: 638 ISKKPQ 621
KKP+
Sbjct: 543 FGKKPE 548
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAEN 639
SM+ G L+AP L ++ LP LI G+MA ++G+L PETL LP TIE AEN
Sbjct: 466 SMVAGSGLLLAPHIVNLGKIVKILPLLIMGLMALSAGILTFFLPETLGAPLPMTIEDAEN 525
Query: 638 ISKKPQ 621
KKP+
Sbjct: 526 FGKKPE 531
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAEN 639
SM+ G L+AP L ++ LP LI G+MA ++G+L PETL LP TIE AEN
Sbjct: 466 SMVAGSGLLLAPHIVNLGKIVKILPLLIMGLMALSAGILTFFLPETLGAPLPMTIEDAEN 525
Query: 638 ISKKPQ 621
KKP+
Sbjct: 526 FGKKPE 531
>Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQ 648
S +G +GS+ AP L + P ++ IM+ + L+LL PET KLP+ ++Q
Sbjct: 406 SFVGELGSIGAPYMNRLTAINQDAPAILISIMSIVAAFLVLLQPETKNKKLPEDLDQ 462
>AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQ 648
S +G +GS+ AP L + P ++ IM+ + L+LL PET KLP+ ++Q
Sbjct: 406 SFVGELGSIGAPYMNRLTAINQDAPAILISIMSIVAAFLVLLQPETKNKKLPEDLDQ 462
>U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical
protein B0252.3a protein.
Length = 297
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = -1
Query: 812 IGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAENIS 633
+ R G +++P L P + ++A + GLL L+ PETL KLP TI AE S
Sbjct: 226 LSRFGGMLSPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKLPSTI--AETAS 283
Query: 632 KK 627
++
Sbjct: 284 RR 285
>U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical
protein B0252.3c protein.
Length = 464
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = -1
Query: 812 IGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAENIS 633
+ R G +++P L P + ++A + GLL L+ PETL KLP TI AE S
Sbjct: 393 LSRFGGMLSPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKLPSTI--AETAS 450
Query: 632 KK 627
++
Sbjct: 451 RR 452
>U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical
protein B0252.3b protein.
Length = 484
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = -1
Query: 812 IGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAENIS 633
+ R G +++P L P + ++A + GLL L+ PETL KLP TI AE S
Sbjct: 413 LSRFGGMLSPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKLPSTI--AETAS 470
Query: 632 KK 627
++
Sbjct: 471 RR 472
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTY-MESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
SM+ R+G+ + +L M +P IF + +G L+LL PET + LPDTI +
Sbjct: 640 SMVARMGAGASGYIAILSDVTMPLVPMTIFACFSLLAGCLVLLLPETQGLPLPDTILDSV 699
Query: 641 NISKKPQN--GTLNG 603
+ K+ GTL+G
Sbjct: 700 QMVKRNTKPCGTLSG 714
>U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical
protein K05F1.6b protein.
Length = 627
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTY-MESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
SM+ R GS ++ LL + +P +IF + + +G+L+ + PET LP+T++ A
Sbjct: 471 SMVARFGSGLSSYIALLSNISLPIVPMIIFAVFSLFAGMLVFVLPETSEKPLPETLDDAI 530
Query: 641 N 639
N
Sbjct: 531 N 531
>U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical
protein K05F1.6a protein.
Length = 773
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTY-MESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTIEQAE 642
SM+ R GS ++ LL + +P +IF + + +G+L+ + PET LP+T++ A
Sbjct: 617 SMVARFGSGLSSYIALLSNISLPIVPMIIFAVFSLFAGMLVFVLPETSEKPLPETLDDAI 676
Query: 641 N 639
N
Sbjct: 677 N 677
>Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical
protein ZK455.8b protein.
Length = 414
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTY-MESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTI 654
SM+ R+G+ + +L M +P IF + +G L+LL PET + LPDTI
Sbjct: 352 SMVARMGAGASGYIAILSDVTMPLVPMTIFACFSLLAGCLVLLLPETQGLPLPDTI 407
>AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic cation
transporter protein.
Length = 414
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTY-MESLPYLIFGIMACTSGLLMLLTPETLRVKLPDTI 654
SM+ R+G+ + +L M +P IF + +G L+LL PET + LPDTI
Sbjct: 352 SMVARMGAGASGYIAILSDVTMPLVPMTIFACFSLLAGCLVLLLPETQGLPLPDTI 407
>AC090999-20|AAP46262.1| 132|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16b protein.
Length = 132
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLI--FGIMACTSGLLMLL-TPETLRVKLPDTIEQ 648
S I R+G++ A + + ++I FG MA + ++ LL PET+ LP++IE+
Sbjct: 49 STIARVGAIAASYISMWIAEQFGKVFMIIPFGCMAVLAAVMTLLFLPETMGKPLPESIEE 108
Query: 647 AE 642
E
Sbjct: 109 IE 110
>AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16a protein.
Length = 575
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLI--FGIMACTSGLLMLL-TPETLRVKLPDTIEQ 648
S I R+G++ A + + ++I FG MA + ++ LL PET+ LP++IE+
Sbjct: 492 STIARVGAIAASYISMWIAEQFGKVFMIIPFGCMAVLAAVMTLLFLPETMGKPLPESIEE 551
Query: 647 AE 642
E
Sbjct: 552 IE 553
>Z81524-4|CAB04250.1| 528|Caenorhabditis elegans Hypothetical
protein F32H5.4 protein.
Length = 528
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIF-GIMACTSGLLMLLTPETLRVKLPDTIEQ 648
S RIG+++ PQ +L Y +SLPY I G + L PET LP+T+ +
Sbjct: 456 SSASRIGTILGPQLFILCPY-KSLPYAILTGFCLFDAIAFQLRLPETKGKPLPETMPE 512
>U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical
protein F23F12.3 protein.
Length = 522
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLL 693
S++ RIG+L+APQ L +PY+I C+ G++ LL
Sbjct: 444 SLLARIGALLAPQMAYLSEIYPPIPYII----VCSIGIISLL 481
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 436 TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 534
T PS+ G+L+ ++LS + NS L R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 436 TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 534
T PS+ G+L+ ++LS + NS L R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 436 TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 534
T PS+ G+L+ ++LS + NS L R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365
>U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical
protein F23F12.13 protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 818 SMIGRIGSLVAPQTPLLMTYMESLPYLIFGIMACTSGLLMLLTPETLRVKLPDT 657
S++ R G+L+APQ L PY + C+ G + LL V LPDT
Sbjct: 432 SLLARTGALLAPQMAYLSDIYRPAPYAV----VCSIGTISLLIS---CVFLPDT 478
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoidance
abnormal protein9 protein.
Length = 937
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/100 (24%), Positives = 42/100 (42%)
Frame = +1
Query: 442 PSLVGRLHRSLLSRPQVTPNSANLSERSCEFG*KNGTPQLGISKVSKTQVEVTTPLRVPF 621
PSL G ++ +P +TP +S E + TP LGI +T + +P+RV
Sbjct: 815 PSLSGE-GATMDWQPSITPVEERSESKSQEDRSEASTPNLGI---HRTTPKADSPIRVVE 870
Query: 622 CGFLLMFSACSMVSGSFTLRVSGVRSISRPDVHAIMPKIR 741
+ A + + ++ S P A+ P++R
Sbjct: 871 YSRTIRVRAADTIPSIELPNIPTKQTSSTPPHRAVSPRLR 910
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory channel
protein.
Length = 937
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/100 (24%), Positives = 42/100 (42%)
Frame = +1
Query: 442 PSLVGRLHRSLLSRPQVTPNSANLSERSCEFG*KNGTPQLGISKVSKTQVEVTTPLRVPF 621
PSL G ++ +P +TP +S E + TP LGI +T + +P+RV
Sbjct: 815 PSLSGE-GATMDWQPSITPVEERSESKSQEDRSEASTPNLGI---HRTTPKADSPIRVVE 870
Query: 622 CGFLLMFSACSMVSGSFTLRVSGVRSISRPDVHAIMPKIR 741
+ A + + ++ S P A+ P++R
Sbjct: 871 YSRTIRVRAADTIPSIELPNIPTKQTSSTPPHRAVSPRLR 910
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,022
Number of Sequences: 27780
Number of extensions: 293479
Number of successful extensions: 733
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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