Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d14
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 157 1e-39
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 28 1.9
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 4.5
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 27 4.5
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 26 7.8
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 7.8
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 7.8
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 26 7.8
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 7.8
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 157 bits (382), Expect = 1e-39
Identities = 66/124 (53%), Positives = 84/124 (67%)
Frame = -3
Query: 384 YNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNYTYKGPKAFQRHFAEWRHAHGMRC 205
YNP LPLGWDGKPIP+WL+KLHGL + CEICGNY Y G KAF +HF E RH +G++C
Sbjct: 369 YNPLKLPLGWDGKPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKC 428
Query: 204 LGIPNTAHFANVTQIEDALALWEKIKQQKETERFVAENDEEFEDSQGNVVNRKTFEDLKR 25
LGI + F +T I++AL LW+K K + + E ED +GNV++ K + DLK
Sbjct: 429 LGISPSPLFNQITSIDEALQLWQKYKVDSKKRETTMASLNEMEDDEGNVMSEKVYNDLKA 488
Query: 24 QGLL 13
QGLL
Sbjct: 489 QGLL 492
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 656 ALKVKQPLTSLLLRKREIRQRLPHNKDKKTLLQLK 552
A+K KQP L++ K + + +NK K+ ++Q K
Sbjct: 176 AIKQKQPFERLVISKEGLLEMFRYNKYKQYIIQTK 210
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/98 (22%), Positives = 40/98 (40%)
Frame = -3
Query: 783 DLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGQTALDKSLVAKKGN 604
D + ++ LA + A++ + +LE +A+ + A + ++A GN
Sbjct: 70 DTAGQERYKSLAPMYYRNANCAIVVYDITQAASLE-KAKSWIKELQRQAPEGIVIALAGN 128
Query: 603 KAKATTQQRQKDIAAIEAQVYRFATIISSTRASTIENV 490
K ++R + A EA + T A T ENV
Sbjct: 129 KLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENV 166
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = -3
Query: 171 VTQIEDALALWEKIK--QQKETERFVAENDE-EFEDSQGNVVNRKTFEDLKR 25
++ +ED L + ++ + +E E +E+DE E ED++G + RKT +D K+
Sbjct: 223 ISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKT-DDAKK 273
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 263 DRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKMPLLCGRKLNNRKKL 111
DRKRF D L + T+C L++ Q+ ++ ++ + GR NN++ L
Sbjct: 628 DRKRFFDFLVN----TQCYSLDHAAQICKQYNYLDELVYILGRMGNNKEAL 674
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 IFESLTIYNIALRIFKFFIILCHETFSFF-LLFNFL 138
IF +LTI +I + FF L FSFF +F F+
Sbjct: 190 IFFALTIVSIVISCLPFFGPLFLNVFSFFATIFTFI 225
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 187 CIRYSKTSHSVSVSPLRKMSLKR 255
C+R T++SVSVS RK+ KR
Sbjct: 22 CLREFATTYSVSVSNARKLVRKR 44
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 198 IPNTAHFANVTQIEDALALWEK 133
IP FANV+Q+ED L EK
Sbjct: 547 IPEPLFFANVSQLEDRLNRLEK 568
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 303 SYNCEICGNYTYKGPK 256
S C CG Y YKG K
Sbjct: 45 SMRCHTCGEYIYKGKK 60
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 177 ANVTQIEDALALWEKIKQQKETERFVAENDEEFEDSQGNVVNRKTFEDLKRQ 22
A V +IED + +++++ E V END E+ Q + KT + L Q
Sbjct: 269 AEVLEIEDKVPKVDEVEEVHSPEAKVTEND--VENVQSGIDIEKTIQLLNNQ 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,035
Number of Sequences: 5004
Number of extensions: 70211
Number of successful extensions: 241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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