Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d14
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 188 4e-48
01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401 58 9e-09
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 30 2.7
03_02_0525 - 9138107-9138237,9138327-9139301,9139379-9139507,913... 29 3.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 4.7
09_06_0329 - 22370367-22370879,22370963-22371225,22373385-223736... 29 6.2
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 29 6.2
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 29 6.2
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 29 6.2
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 28 8.2
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 188 bits (459), Expect = 4e-48
Identities = 74/124 (59%), Positives = 99/124 (79%)
Frame = -3
Query: 384 YNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNYTYKGPKAFQRHFAEWRHAHGMRC 205
YNP LP+GWDGKPIPYWLYKLHGL + CEICGN++Y G +A++RHF EWRH HGMRC
Sbjct: 101 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRC 160
Query: 204 LGIPNTAHFANVTQIEDALALWEKIKQQKETERFVAENDEEFEDSQGNVVNRKTFEDLKR 25
LGIPNT +F +T I++A LWEKI+Q++ ++ + +EE+ED +GN+ N+KT+ DL+R
Sbjct: 161 LGIPNTKNFNEITSIQEAKELWEKIQQRQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQR 220
Query: 24 QGLL 13
QGL+
Sbjct: 221 QGLI 224
>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
Length = 444
Score = 58.0 bits (134), Expect = 9e-09
Identities = 34/66 (51%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = -3
Query: 786 LDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLF--STKGQTALDKSLVAK 613
LDL+ +SS EL LG++RLK L GLKCGGTL+ERA RLF T L K L AK
Sbjct: 379 LDLTIYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAARLFLLKTTPLEKLPKKLFAK 438
Query: 612 KGNKAK 595
K
Sbjct: 439 PSGGGK 444
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 157 FNLCDIGKMSCIRYSKTSHSVSVS-PLRKMSLKRFRSL 267
FNL +IG++ +RY K S ++SV PL+ L+ +L
Sbjct: 143 FNLTNIGRLFQLRYMKISCNISVDLPLKMQGLQYLETL 180
>03_02_0525 -
9138107-9138237,9138327-9139301,9139379-9139507,
9139623-9139867,9139986-9140137,9140236-9140346
Length = 580
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 717 ELILICPGQETPTLPMMKKPTDLNAPPHLLKLHQFXXGHPG 839
+++LI PGQ T L K + HL+ + G PG
Sbjct: 265 DVVLITPGQTTNVLLRAKPTAEAAGATHLMMARPYATGRPG 305
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -1
Query: 164 KLKMPLLCGRKLNNRKKLNVSWQRMMKNLKILKAML*IVRLSKI*NAKDFY 12
KLK P L L KL V W+ MKNL ++ +L+K+ +D Y
Sbjct: 820 KLKYPQLRREVLQKLIKLGVGWRTTMKNLNF--NVIDPFQLAKVYKVRDLY 868
>09_06_0329 -
22370367-22370879,22370963-22371225,22373385-22373660,
22373782-22373815
Length = 361
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 326 YNQYGIGFPSHPSGKF 373
Y YGI FP HP+G+F
Sbjct: 78 YYPYGITFPRHPTGRF 93
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 192 NTAHFANVTQIEDALALWEKIKQQKETERFVAENDEE 82
N N+T + L+L+ ++KQQ + E+F D E
Sbjct: 247 NNGPLLNLTNQQPTLSLFSQLKQQNKPEKFNTAGDSE 283
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -3
Query: 267 KGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVT---QIEDALALWEKIKQQKETERFVA 97
KG F + + + H HGM CL H N + + L L +K ++ ++ +
Sbjct: 201 KGFVPFSQVSSVYVHVHGMSCLSSAVLNHIVNTSCPLFYKPLLDLDQKSTAEELLDKELP 260
Query: 96 ENDEEFEDSQGNVV--NRKTFEDLKRQ 22
E ++ QG +V NRK D + Q
Sbjct: 261 LKFVEVDEEQGRLVLSNRKAMADSQAQ 287
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 206 VLEYRIQLILPMSHKLKMPLLCGRKLNNR 120
++ + + L+ S K KMPL+C RK+ R
Sbjct: 80 IIRHELSLMRVSSSKTKMPLICKRKMPRR 108
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 378 PKNLPLGWDGKPIPYWL--YKLHGLNISYNCEICG-NYTY 268
P+ P+GW G YWL K+ G +N +C NY Y
Sbjct: 223 PRRRPIGWYGCVDNYWLDGNKVDGAEKLFNHVLCDLNYIY 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,846,411
Number of Sequences: 37544
Number of extensions: 441340
Number of successful extensions: 1341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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