Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d14
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 310 8e-85
Z77663-17|CAB54256.5| 500|Caenorhabditis elegans Hypothetical p... 55 7e-08
AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical ... 55 7e-08
Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical pr... 30 2.4
U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone conv... 30 2.4
CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical ... 29 3.2
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 29 4.2
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical ... 29 4.2
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 29 4.2
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 29 4.2
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 29 4.2
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF047665-3|AAC04456.3| 566|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical protein
T13H5.4 protein.
Length = 500
Score = 310 bits (761), Expect = 8e-85
Identities = 148/261 (56%), Positives = 178/261 (68%), Gaps = 1/261 (0%)
Frame = -3
Query: 792 AHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGQTALDKSLVAK 613
A +DLS ++S EEL LGL+RLK ALMA+GLKCGGTL+ERA RLF+TKG D A
Sbjct: 243 AAVDLSPYNSAEELEGLGLERLKGALMAIGLKCGGTLKERADRLFATKGHKLSDLEKAAM 302
Query: 612 KGNKAKATTQQRQK-DIAAIEAQVYRFATIISSTRASTIENVTXXXXXXXXXXRDESGXX 436
N + A Q + +A EA + A I++ R T ENV +E
Sbjct: 303 SSNNSDAEKQNAKNLTLAQTEAHIMALADILAEERTGTRENVERKQARSAGEVEEEE--- 359
Query: 435 XXXXXXXXXXXXXDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNYTYKGPK 256
+ PYNPKNLPLGWDGKPIPYWLYKLHGLN+SY+CEICGN TYKGPK
Sbjct: 360 EEEIVIEEEEEIDESAPYNPKNLPLGWDGKPIPYWLYKLHGLNLSYSCEICGNQTYKGPK 419
Query: 255 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKIKQQKETERFVAENDEEFE 76
AFQ+HF EWRH+HGMRCLGIPNT+HFAN+T+I+DAL LW K+K +KE ++ + DEE+E
Sbjct: 420 AFQKHFNEWRHSHGMRCLGIPNTSHFANITKIKDALDLWNKLKTEKEMAKWNPDIDEEYE 479
Query: 75 DSQGNVVNRKTFEDLKRQGLL 13
DS GNVV RK +EDLKRQGLL
Sbjct: 480 DSSGNVVTRKMYEDLKRQGLL 500
>Z77663-17|CAB54256.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 54.8 bits (126), Expect = 7e-08
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = -3
Query: 786 LDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGQTALD--KSLVAK 613
+ L F+S E+L LGL+ LKSAL GLKCGG+L ERA RL+ KG+ + K+++
Sbjct: 414 ISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPREYPKNILTP 473
Query: 612 KGNKAKATTQQRQKDIA 562
+ K A ++ ++ A
Sbjct: 474 ELKKKIAEEEEAERKAA 490
>AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 54.8 bits (126), Expect = 7e-08
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = -3
Query: 786 LDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGQTALD--KSLVAK 613
+ L F+S E+L LGL+ LKSAL GLKCGG+L ERA RL+ KG+ + K+++
Sbjct: 414 ISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPREYPKNILTP 473
Query: 612 KGNKAKATTQQRQKDIA 562
+ K A ++ ++ A
Sbjct: 474 ELKKKIAEEEEAERKAA 490
>Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical
protein C51E3.7b protein.
Length = 556
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 324 KLHGLNISYNCEICGNYTYKGPKAFQRHFAEWRHAHGMRCLG 199
KLH N N E +++ P + R+ +W ++HG RC G
Sbjct: 86 KLH--NDDENAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAG 125
>Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical
protein C51E3.7a protein.
Length = 652
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 303 SYNCEICGNYTYKGPKAFQRHFAEWRHAHGMRCLG 199
++N E +++ P + R+ +W ++HG RC G
Sbjct: 187 NFNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAG 221
>U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone
convertase 2 protein.
Length = 652
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 303 SYNCEICGNYTYKGPKAFQRHFAEWRHAHGMRCLG 199
++N E +++ P + R+ +W ++HG RC G
Sbjct: 187 NFNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAG 221
>CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical
protein C50E10.8 protein.
Length = 362
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 40 ESLTIYNIALRIF--KFFIILCHETFSFFLLFNFLPQSKGIFNLC 168
E+L ++N+ R+F FF+I+ TF + F + P + + C
Sbjct: 246 ENLRVFNLTARVFVVGFFLIILGFTFCVMITFEWAPSLETLLIFC 290
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = -1
Query: 488 RVVLQELLVN-VATKAVTKVMLLQ--HQT-----LIQMMMKCHIILRICHWDGMESLFHI 333
R++ +EL+ N T+ + V L H T L++ + H RI + ++ F
Sbjct: 326 RLIKEELITNDKITRLLANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLK 385
Query: 332 GYTSYTVSI*ATIAKFAGTIHTRDRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKM 153
Y+ YT + F + +K+F D+++ + EC+ L LI P+ ++
Sbjct: 386 MYSEYTNNYDRATKLFE---ELKKKKKFADVVKEIEKQAECEGLPLGHHLICPVQRVMRY 442
Query: 152 PLL 144
LL
Sbjct: 443 QLL 445
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = -1
Query: 488 RVVLQELLVN-VATKAVTKVMLLQ--HQT-----LIQMMMKCHIILRICHWDGMESLFHI 333
R++ +EL+ N T+ + V L H T L++ + H RI + ++ F
Sbjct: 326 RLIKEELITNDKITRLLANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLK 385
Query: 332 GYTSYTVSI*ATIAKFAGTIHTRDRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKM 153
Y+ YT + F + +K+F D+++ + EC+ L LI P+ ++
Sbjct: 386 MYSEYTNNYDRATKLFE---ELKKKKKFADVVKEIEKQAECEGLPLGHHLICPVQRVMRY 442
Query: 152 PLL 144
LL
Sbjct: 443 QLL 445
>Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical
protein F21D5.1 protein.
Length = 550
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 352 WKAYSILVIQVTRSQYKLQLRNLRELYIQGTESVSETFCGVETR 221
W+ Y+ V+ T ++ +R L + G +S CG++TR
Sbjct: 96 WEIYATEVVNATDAELPAAVRALEKQISVGKTQLSRVVCGMDTR 139
>AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical
protein Y39G8B.3 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 82 FFIILCHETFSFFLLFNFLPQSKGIFNLCDI 174
FFI+ + FL FN PQ + NLC I
Sbjct: 269 FFIVCLGLLTAIFLFFNLFPQLDTVLNLCFI 299
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = -1
Query: 488 RVVLQELLVN-VATKAVTKVMLLQ--HQT-----LIQMMMKCHIILRICHWDGMESLFHI 333
R++ +EL+ N T+ + V L H T L++ + H RI + ++ F
Sbjct: 326 RLIKEELITNDKITRLLANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLK 385
Query: 332 GYTSYTVSI*ATIAKFAGTIHTRDRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKM 153
Y+ YT + F + +K+F D+++ + EC+ L LI P+ ++
Sbjct: 386 MYSEYTNNYDRATKLFE---ELKKKKKFADVVKEIEKQAECEGLPLGHHLICPVQRVMRY 442
Query: 152 PLL 144
LL
Sbjct: 443 QLL 445
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = -1
Query: 488 RVVLQELLVN-VATKAVTKVMLLQ--HQT-----LIQMMMKCHIILRICHWDGMESLFHI 333
R++ +EL+ N T+ + V L H T L++ + H RI + ++ F
Sbjct: 326 RLIKEELITNDKITRLLANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLK 385
Query: 332 GYTSYTVSI*ATIAKFAGTIHTRDRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKM 153
Y+ YT + F + +K+F D+++ + EC+ L LI P+ ++
Sbjct: 386 MYSEYTNNYDRATKLFE---ELKKKKKFADVVKEIEKQAECEGLPLGHHLICPVQRVMRY 442
Query: 152 PLL 144
LL
Sbjct: 443 QLL 445
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Frame = -1
Query: 488 RVVLQELLVN-VATKAVTKVMLLQ--HQT-----LIQMMMKCHIILRICHWDGMESLFHI 333
R++ +EL+ N T+ + V L H T L++ + H RI + ++ F
Sbjct: 326 RLIKEELITNDKITRLLANVSSLYQFHNTHFLPQLLESIRDWHTTKRIANVVRKQAPFLK 385
Query: 332 GYTSYTVSI*ATIAKFAGTIHTRDRKRFRDILRSGDTLTECDVLEYRIQLILPMSHKLKM 153
Y+ YT + F + +K+F D+++ + EC+ L LI P+ ++
Sbjct: 386 MYSEYTNNYDRATKLFE---ELKKKKKFADVVKEIEKQAECEGLPLGHHLICPVQRVMRY 442
Query: 152 PLL 144
LL
Sbjct: 443 QLL 445
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 801 NVGAHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRL 661
N GA +D+S F WE+ +R+ +A G+ G+ R Q+L
Sbjct: 587 NTGARVDISLFGYWEDADRSHFERID--YLARGISNTGSYSFRPQQL 631
>AF047665-3|AAC04456.3| 566|Caenorhabditis elegans Hypothetical
protein T23E1.1 protein.
Length = 566
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 85 FIILCHETFS--FF--LLFNFLPQSKGIFNLCDIGK-MSCIRYSKTSHSVSVSPLRKMSL 249
F++ C + F F+ FNFLP+S+ + NL + + + S SH+ ++ L K SL
Sbjct: 159 FVVFCRDPFGNHFYNKTFFNFLPRSETLTNLSSSDESLMILSISGMSHNQAMRHL-KRSL 217
Query: 250 K 252
K
Sbjct: 218 K 218
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -3
Query: 195 PNTAHFANVTQIEDALALWEKIKQQKETERFVAENDEEFEDSQGNVVNRKTFED 34
PN F +T+ E+ A WE+ ++QK+TER E + +V + ++ ED
Sbjct: 280 PNNK-FKKLTK-EEKKAQWEERRRQKDTERAEDEERRREAEEDEDVSDEESDED 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,006,438
Number of Sequences: 27780
Number of extensions: 401536
Number of successful extensions: 1565
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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