Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d14
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.7  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 693 GGTLEERAQRLFSTKGQTALDKSLVAKKGNKAKATTQQRQKDIAAIEAQV 544
           GGT EE+  R   +  Q A  K   A+     +   QQ  +D+   EAQ+
Sbjct: 15  GGTPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQI 64


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 587 HNKDKKTLLQLKHR 546
           HN+D + L+ LKHR
Sbjct: 647 HNEDMEKLMMLKHR 660


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 609  PFSQQETCQGLFDL*C*TTSVLFLPKFHHILSREP*ELILICPGQETPTLPMMKKPTDLN 788
            P SQQ    G+F+L   TT  L +   + I + +P + + I   +E P+ P      D +
Sbjct: 930  PGSQQNVA-GVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIRVD-D 987

Query: 789  APPHLLKL 812
               H LK+
Sbjct: 988  LDQHTLKV 995


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 331 VIQVTRSQYKLQLRNLRELYIQGTES 254
           VIQ+ + +YK   RN+ +   Q TES
Sbjct: 258 VIQLKKEEYKSGKRNIIDNSAQKTES 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,513
Number of Sequences: 438
Number of extensions: 5612
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)