Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d13
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.019
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.95 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   2.9  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   5.1  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   5.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   6.7  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 607 LILTAATCWLFWLCAYMAQMNPLIGP 530
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 726 SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 631
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 252 LYLWPFFIICAEELSYQILTAVLFSFL---FLDSQIEHP*LLRN*SLFAIERKKKNNIQL 82
           L+  P F I     +  +LTA LF  +   F+++ I H   LRN ++    +KK  +I L
Sbjct: 244 LFSHPRFTIPLVAAAITVLTASLFDPIRKFFVETNIVHGQKLRNINVVGWVKKKTRDIVL 303

Query: 81  KTVESFGT 58
                 GT
Sbjct: 304 SPFHENGT 311


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = +3

Query: 60  YRMIRQFLIVYCFFFFFQSQTRINYGAIKDARF--------VNLRREKKIILQSKFDMTV 215
           YR +R F+ ++  F FF+ Q R +   +K  +F        V LR  +KI+  +  D  +
Sbjct: 247 YRQLRDFINLHSHFLFFEFQHRFSGRRMKLPKFPKEVLPYLVKLRGYQKILYSNPSDQLI 306


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 688 SILWGVVGIICPIFAPKGPNRGIIQV 611
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 223 CRGTVISNFDCSIIFFSLLRFTNRASLI 140
           C G V++ F    I F++L+FT+ AS +
Sbjct: 11  CCGAVVTAFSVIGIVFTILKFTSFASFV 38


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 735 NNISKWAT--PLSRSSFSPSFGVWLVLFAPSSHLKDQTEGL 619
           +N+ K A   PLS+ S SPS+  + V     S L+  ++GL
Sbjct: 41  DNVDKPANSIPLSKRSTSPSYAPYTVACPSGSLLRPASDGL 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,985
Number of Sequences: 5004
Number of extensions: 65893
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)