Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d12
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 42 5e-04
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 0.53
05_01_0301 - 2356880-2357959 32 0.53
06_01_1179 + 10137652-10138038 32 0.70
04_04_0765 - 27910189-27912393,27912521-27912598 30 2.1
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 30 2.8
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 30 2.8
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 3.7
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 4.9
12_01_0373 + 2897874-2898911 29 6.5
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 8.6
03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492 28 8.6
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 42.3 bits (95), Expect = 5e-04
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Frame = -2
Query: 807 DEVSVGSKTIVAAPAVVVNDP-IESSTGASATEV-INDEVSVGSKTIV---AAPAVVVND 643
+ V S +++ V+ +E + SATE I ++ S GS T AA V
Sbjct: 445 ESVETASSVVISEDDSTVDGKLVEPTASVSATETEIKEDSSEGSVTTEPTEAASTEFVTA 504
Query: 642 VIESSTG-ASATEVINDEVSVGSKTIVAAPAVVVNDVIESPTGASATEVINDEVSVGSKT 466
V+E S AS+ E D+ +V K + +V + ES +S V + E SV +
Sbjct: 505 VVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSVASTE-SVTAVV 562
Query: 465 IVAAP--AVVVNDPIESSTGASATEVINDEALV 373
+AP +V + P ++ ASA E+I D V
Sbjct: 563 EESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 32.3 bits (70), Expect = 0.53
Identities = 33/160 (20%), Positives = 58/160 (36%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTT 553
T+ S S +P S + + + PT S TS + +P S + + +
Sbjct: 1581 TSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPV 733
+ V PT + TS A +P S + + + + PT S TS + +P
Sbjct: 1641 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Query: 734 EDSIGSFTTTAGAATIVLEPTDTSSLNYFGSAYSSWRLNY 853
S + + + PT + + +YS NY
Sbjct: 1701 SPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSPTSPNY 1739
Score = 31.9 bits (69), Expect = 0.70
Identities = 28/145 (19%), Positives = 54/145 (37%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTT 553
T+ S TS + +P S + + + V PT + TS A +P S + + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPV 733
+ PT S TS + +P S + + + + PT TS + +P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1735
Query: 734 EDSIGSFTTTAGAATIVLEPTDTSS 808
+ + + ++ P+ S
Sbjct: 1736 SPNYSPTSPSYNPSSAKYSPSHAYS 1760
Score = 30.3 bits (65), Expect = 2.1
Identities = 32/154 (20%), Positives = 55/154 (35%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTT 553
T+ S TS + +P S + + + PT S TS +P + + +
Sbjct: 1602 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPA 1661
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPV 733
+ PT S TS + +P S + + + + PT S TS A +P
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1721
Query: 734 EDSIGSFTTTAGAATIVLEPTDTSSLNYFGSAYS 835
+ + + PT + S N + YS
Sbjct: 1722 SPGYSPTSPSYSPTSPNYSPT-SPSYNPSSAKYS 1754
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/137 (19%), Positives = 48/137 (35%)
Frame = +2
Query: 395 TSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTTAGAATIV 574
TS + +P S + + + PT S TS + +P S + + + +
Sbjct: 1567 TSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1626
Query: 575 LEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSIGSF 754
PT S TS + +P + + + PT S TS + +P S
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Query: 755 TTTAGAATIVLEPTDTS 805
+ + + PT S
Sbjct: 1687 SPSYSPTSPSYSPTSPS 1703
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/144 (20%), Positives = 50/144 (34%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTT 553
T+ S S + +P S + T + PT S TS + +P S + + +
Sbjct: 1567 TSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1626
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPV 733
+ PT S TS +P + + + + PT S TS + +P
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Query: 734 EDSIGSFTTTAGAATIVLEPTDTS 805
S + + + PT S
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPS 1710
>05_01_0301 - 2356880-2357959
Length = 359
Score = 32.3 bits (70), Expect = 0.53
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Frame = +2
Query: 425 SIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTTAGAATIVLEPTDTSSLI 604
+IG T A V++ D SL+ + A AP G S+ + A AT+ + P D
Sbjct: 214 AIGDEMTAASGIGGVVDENDPRSLVCAYAFAPCGYSMNALDG-ARYATVHVTPEDGHCYA 272
Query: 605 T--------SVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALA 727
+ + ALA + ++ +F + +I + SSL T VA A
Sbjct: 273 SFECATDDAAAALAAIRRAVAAFRPATVSVSISHTSSAASSLCTPVAEA 321
>06_01_1179 + 10137652-10138038
Length = 128
Score = 31.9 bits (69), Expect = 0.70
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVGDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 667
AG + + PT +++++ VA P + + F + AGA
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 30.3 bits (65), Expect = 2.1
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Frame = -2
Query: 780 IVAAPAVVVNDPIESSTGASATEVINDEVSVG-SKTIVAAPAVVVNDVIESSTGASATEV 604
+ A+P VV P+++ + A+ + G VAA V+ + +A V
Sbjct: 367 VTASPVDVV-PPVDAGSPAADVATTCSPAAAGMPAAAVAAAGSTAPAVVAPDSPVAAVAV 425
Query: 603 INDEVSVGSKTIVAAPAVVVNDVIESPTGASATEVINDEVSVGSKTIVAAPAVVVNDPIE 424
+ +V + + AA V + SP A A + V V S ++VA V P+
Sbjct: 426 FSSPTAVAASSSPAASPVDIVAASSSPAAAVAA-FGSPAVVVASNSLVAGSLAAVVSPVC 484
Query: 423 SSTGASA 403
+++ +A
Sbjct: 485 ATSPVAA 491
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/112 (21%), Positives = 44/112 (39%)
Frame = -2
Query: 720 ATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 541
ATE++ D V G ++N + A E+ N+ + G K + +V
Sbjct: 309 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 368
Query: 540 DVIESPTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVIND 385
+ A +V+N+ G + +V+N + + AT V+ND
Sbjct: 369 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 420
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.9 bits (64), Expect = 2.8
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Frame = +2
Query: 398 SVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGD--SITSF-TTTAGAAT 568
S LA +D +GS TTA A+ + E T + + + S + V D SI+ + AG+
Sbjct: 3066 SAQLADGDDLVGSKDTTAAHASGLKELT-SGNYVASSSSHVVQDVTSISKMESVQAGSEE 3124
Query: 569 IVLEPTDTSSLITSVALAPVEDS-ITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSI 745
I +D + I S + PV + IT + A A I ++P + + +L +E SI
Sbjct: 3125 IYHGYSDET--IHSARIKPVVGTEITENASVASAPVITIQPDIETEAGVTASLTVLEGSI 3182
Query: 746 GSFTTT 763
T
Sbjct: 3183 AEEVDT 3188
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.5 bits (63), Expect = 3.7
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = -2
Query: 765 AVVVNDPIESSTGASATEVINDEVSVGSKTIVAAPAVVVN-DVIESSTGASATEVINDEV 589
A+ N + T +S+++ +DE S AAP + I+ T S + + +
Sbjct: 168 ALATNGSKKVETDSSSSDSSSDEESDEDDKKTAAPVKKPSVAAIQKKTQESDSSDSDSDS 227
Query: 588 SVGSKTIVAAPAVVVNDVIESPTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGA 409
APAV E + +S +E +D +KTI+ A A V ESS +
Sbjct: 228 ESDEDVPTKAPAVAKKK--EESSESSDSESDSDSDDEAAKTIIPAKAAAVKKEEESSDSS 285
Query: 408 SA 403
+
Sbjct: 286 DS 287
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 675 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESPTGASATEVI 496
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 495 NDEV 484
++E+
Sbjct: 333 SEEI 336
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 570 IVAAPAVVVNDVIESPTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVGDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 494 LITSVALAPVGDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 670
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
Length = 509
Score = 28.3 bits (60), Expect = 8.6
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Frame = +2
Query: 482 DTSSLITSVALAPVG-DSITSFTTTAGAATIVLEPTDTSSLITSVALAPVED---SITSF 649
D ++L+ A + G D F + +G S +SV +A D ++ F
Sbjct: 202 DAAALLPDDAPSQGGADDTVYFLSKSGDVVATNMQRSASKQYSSVVVAASSDGGDAVAYF 261
Query: 650 TTTAGAATIVLEPTDTSSLITSVALAPV--EDSIGSFTTTAGAATIVL-EPTDTSSLNYF 820
+ +G T+V T + + PV E SI A +VL E DT+SL +
Sbjct: 262 LSHSG--TVVACDTARRTFAELPRILPVYFEYSIDVVACDGAAYAVVLAEYLDTASLRVW 319
Query: 821 GSAYSSWR 844
G A +WR
Sbjct: 320 GFAGGAWR 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,174
Number of Sequences: 37544
Number of extensions: 342408
Number of successful extensions: 1097
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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