Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d09
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          26   1.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   8.7  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   8.7  

>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 135 ADLCALALELPDVSGLCPVFEAYDFNCIDFYKYVKTD 25
           AD+ AL L L +++  C V   YD   + FY  V+ D
Sbjct: 253 ADVYALGLVLWEIARRCNVDGVYDEYQLPFYDVVQPD 289


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 74  SNTGQSPETSGNSSANAQRSATNGAS 151
           S  GQ    +G  S N   SATNGAS
Sbjct: 382 SQIGQ--HVAGTGSLNGSGSATNGAS 405


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 74  SNTGQSPETSGNSSANAQRSATNGAS 151
           S  GQ    +G  S N   SATNGAS
Sbjct: 382 SQIGQ--HVAGTGSLNGSGSATNGAS 405


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,120
Number of Sequences: 2352
Number of extensions: 17242
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)