Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d09
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine re...    28   9.4  

>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115 CQCTEVGHKWREFFRICLK-ISWKTASDNLITCTVRADSD 231
           CQ      K R+ FR C K + WK  +  L  C+V+A  D
Sbjct: 184 CQPLVAETKARQSFRACTKKMHWKREAGELCECSVQAGVD 223


>AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein35 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 754 PCEGWGSRCNYTETLELISQGG*RIYSWRCLWD 656
           P   WG    YTE L ++S G  + Y   CLWD
Sbjct: 154 PTTVWGLPNQYTEKLSIVSSG--KFYP-DCLWD 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,206,665
Number of Sequences: 27780
Number of extensions: 380464
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)