Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d08
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 2.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 2.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 2.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.2
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 5.5
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 24 7.3
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 23 9.6
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 23 9.6
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 23 9.6
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 23 9.6
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 23 9.6
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 319 YKEKLICILSILFLKNKLKKTIGNVSGASS*RYTDHISG 203
Y+++ ++FL++ L + GN+ +S YT++ SG
Sbjct: 100 YRQRKSVYPMLMFLRSSLLRNFGNIGNSS--LYTENYSG 136
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 2.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 5 NTRQSPCIASAISIQSMALHKSS 73
N RQ C++S S S+AL KSS
Sbjct: 434 NERQRQCLSSCSSHLSLALQKSS 456
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 2.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 273 INSKKLSATFRGHPLDGTQITFPEGYRAVLVTETKRPLTEDAERKFQVTGGFKNFT 106
+ S K S T + L+ Q T P+G E L +++ER Q GG K ++
Sbjct: 1734 LKSNKFSGT---NDLNFQQATKPDGSNKSSYMERLEKLKQNSERHLQSVGGKKVYS 1786
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = -1
Query: 328 NEDYK----EKLICILSILFLKNKLKKTI 254
N+DY+ E L+ + S +F+KNKL+ I
Sbjct: 886 NDDYQVLVCENLVGLFSCVFVKNKLQSKI 914
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 23 CIASAISIQSMALHKSSFFDGFLSQFQYV 109
C+ S+ ALH F++ F S ++Y+
Sbjct: 318 CLVELESVFYKALHDEKFWEEFRSYYEYM 346
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 101 QYVKFLKPPVTWNFLSAS 154
Q+++ LK P+TW F A+
Sbjct: 320 QFIEALKDPITWLFTFAA 337
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Frame = +2
Query: 200 PSGNVI-CVPSRGCP 241
P G VI C+P R CP
Sbjct: 94 PDGMVIACIPKRSCP 108
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 198 YRAVLVTETKRPLTEDAERKFQVTGGFKNFTYWNWD 91
++ VL+ +T R L+ D + K + GG + WD
Sbjct: 148 FKRVLMRQTSRILSLDFQTKDHLVGGCADGVIKVWD 183
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 95 QFQYVKFLKPPVTWNF 142
++Q ++ LK PVTW F
Sbjct: 305 KYQVIEALKDPVTWLF 320
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 56 PWTGSRLRKRY 24
PWT S LR+RY
Sbjct: 463 PWTPSNLRRRY 473
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 53 WTGSRLRKRYMAIDEC 6
+TG++LR+RY + C
Sbjct: 256 FTGAKLRRRYALVQRC 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,712
Number of Sequences: 5004
Number of extensions: 23774
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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