Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d08
(340 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023588-1|AAH23588.1| 164|Homo sapiens ribonuclease H2, subuni... 37 0.014
AK024627-1|BAB14937.1| 163|Homo sapiens protein ( Homo sapiens ... 37 0.014
AF346606-1|AAO49177.1| 164|Homo sapiens AYP1 protein. 37 0.014
AF346605-1|AAO49176.1| 164|Homo sapiens AYP1 protein. 37 0.014
AF312034-1|AAL87739.1| 164|Homo sapiens RNase H1 small subunit ... 37 0.014
DQ926256-1|ABK81475.1| 138|Homo sapiens immunoglobulin heavy ch... 29 4.8
BC018757-1|AAH18757.1| 406|Homo sapiens chromosome 1 open readi... 29 4.8
BC011575-1|AAH11575.1| 415|Homo sapiens C1orf85 protein protein. 29 4.8
AY358450-1|AAQ88815.1| 406|Homo sapiens RGSV2553 protein. 29 4.8
AL589685-7|CAI14165.1| 183|Homo sapiens chromosome 1 open readi... 29 4.8
AL589685-6|CAI14164.1| 406|Homo sapiens chromosome 1 open readi... 29 4.8
AK075349-1|BAC11561.1| 406|Homo sapiens protein ( Homo sapiens ... 29 4.8
AF062220-1|AAC18256.1| 140|Homo sapiens immunoglobulin heavy ch... 29 4.8
Y08259-1|CAA69587.1| 125|Homo sapiens IgM variable region protein. 28 6.4
BC036340-1|AAH36340.1| 392|Homo sapiens C1orf85 protein protein. 28 6.4
AF103203-1|AAD30763.1| 106|Homo sapiens immunoglobulin heavy ch... 28 6.4
X61650-1|CAA43831.1| 118|Homo sapiens Ig H-chain V-region (VH4D... 28 8.5
L23570-1|AAA52884.1| 157|Homo sapiens immunoglobulin heavy chai... 28 8.5
>BC023588-1|AAH23588.1| 164|Homo sapiens ribonuclease H2, subunit C
protein.
Length = 164
Score = 37.1 bits (82), Expect = 0.014
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRA-VLVTETKR--------------------PLTEDAER 142
L +FRG L G ++ P G V+VTE K+ PL D +R
Sbjct: 59 LEVSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDR 118
Query: 141 KFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 22
T F FT W + P + + A+ W +A AIH
Sbjct: 119 FIGATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIH 158
>AK024627-1|BAB14937.1| 163|Homo sapiens protein ( Homo sapiens
cDNA: FLJ20974 fis, clone ADSU01596. ).
Length = 163
Score = 37.1 bits (82), Expect = 0.014
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRA-VLVTETK-------------------RPLTEDAERK 139
L +FRG L G ++ P G V+VTE K PL D +R
Sbjct: 59 LEVSFRGRCLRGEEVAVPPGLVGYVMVTEEKVSMGKPDPLRDSGTDDQEEEPLERDFDRF 118
Query: 138 FQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 22
T F FT W + P + + A+ W +A AIH
Sbjct: 119 IGATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIH 157
>AF346606-1|AAO49177.1| 164|Homo sapiens AYP1 protein.
Length = 164
Score = 37.1 bits (82), Expect = 0.014
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRA-VLVTETKR--------------------PLTEDAER 142
L +FRG L G ++ P G V+VTE K+ PL D +R
Sbjct: 59 LEVSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDR 118
Query: 141 KFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 22
T F FT W + P + + A+ W +A AIH
Sbjct: 119 FIGATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIH 158
>AF346605-1|AAO49176.1| 164|Homo sapiens AYP1 protein.
Length = 164
Score = 37.1 bits (82), Expect = 0.014
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRA-VLVTETKR--------------------PLTEDAER 142
L +FRG L G ++ P G V+VTE K+ PL D +R
Sbjct: 59 LEVSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDR 118
Query: 141 KFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 22
T F FT W + P + + A+ W +A AIH
Sbjct: 119 FIGATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIH 158
>AF312034-1|AAL87739.1| 164|Homo sapiens RNase H1 small subunit
protein.
Length = 164
Score = 37.1 bits (82), Expect = 0.014
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRA-VLVTETKR--------------------PLTEDAER 142
L +FRG L G ++ P G V+VTE K+ PL D +R
Sbjct: 59 LEVSFRGRCLRGEEVAVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDR 118
Query: 141 KFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 22
T F FT W + P + + A+ W +A AIH
Sbjct: 119 FIGATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIH 158
>DQ926256-1|ABK81475.1| 138|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 138
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 159 TEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
+ED V+GGF + YW+W ++P K ++WI
Sbjct: 15 SEDLSLTCTVSGGFISSYYWSWIRQPPG-----KGLEWI 48
>BC018757-1|AAH18757.1| 406|Homo sapiens chromosome 1 open reading
frame 85 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 169 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 203
>BC011575-1|AAH11575.1| 415|Homo sapiens C1orf85 protein protein.
Length = 415
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 178 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 212
>AY358450-1|AAQ88815.1| 406|Homo sapiens RGSV2553 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 169 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 203
>AL589685-7|CAI14165.1| 183|Homo sapiens chromosome 1 open reading
frame 85 protein.
Length = 183
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 83 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 117
>AL589685-6|CAI14164.1| 406|Homo sapiens chromosome 1 open reading
frame 85 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 169 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 203
>AK075349-1|BAC11561.1| 406|Homo sapiens protein ( Homo sapiens
cDNA PSEC0030 fis, clone NT2RP1000567, highly similar to
Kidney predominant protein NCU-G1. ).
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEG---YRAVLVTETKRP 163
LSATF+GHP++ TF G +R + + RP
Sbjct: 169 LSATFQGHPMNDPTRTFANGSLAFRVQAFSRSSRP 203
>AF062220-1|AAC18256.1| 140|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 140
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 132 VTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
V+GGF + YW+W ++P+ K +DWI
Sbjct: 43 VSGGFISGYYWSWIRQPAG-----KGLDWI 67
>Y08259-1|CAA69587.1| 125|Homo sapiens IgM variable region protein.
Length = 125
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 132 VTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
V+GG N YWNW ++P K ++WI
Sbjct: 24 VSGGSMNSFYWNWVRQPPG-----KGLEWI 48
>BC036340-1|AAH36340.1| 392|Homo sapiens C1orf85 protein protein.
Length = 392
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 258 LSATFRGHPLDGTQITFPEGYRAVLVTETKR 166
LSATF+GHP++ TF G A V R
Sbjct: 155 LSATFQGHPMNDPTRTFANGSLAFRVQAFSR 185
>AF103203-1|AAD30763.1| 106|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 106
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 132 VTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
V+GG N YWNW ++P+ K ++WI
Sbjct: 2 VSGGSINTYYWNWIRQPAG-----KGLEWI 26
>X61650-1|CAA43831.1| 118|Homo sapiens Ig H-chain V-region (VH4DJ)
protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 132 VTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
V+GG +F+YW W ++P K ++WI
Sbjct: 24 VSGGSLSFSYWGWIRQPPG-----KGLEWI 48
>L23570-1|AAA52884.1| 157|Homo sapiens immunoglobulin heavy chain
protein.
Length = 157
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 132 VTGGFKNFTYWNWDKKPSKNDDLCKAMDWI 43
V+GG N YW+W +KP+ + +DWI
Sbjct: 46 VSGGSINNYYWSWIRKPAG-----RGLDWI 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,370,989
Number of Sequences: 237096
Number of extensions: 818384
Number of successful extensions: 2040
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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