Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d08
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   9.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 41  SIQSMALHKSSFFDGFLS-QFQYVK 112
           S+ S+ L  S FFD F++ Q Q +K
Sbjct: 298 SVTSVRLISSGFFDNFVTVQIQPLK 322



 Score = 19.8 bits (39), Expect = 9.4
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = -1

Query: 307 LICILSILFLKNKLKKTIGNVSGASS*RYTDHISG 203
           L C   + F+        G + G    RY   ISG
Sbjct: 7   LYCFARLFFIIGFFNAISGAIKGNDYQRYHQQISG 41


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -2

Query: 264 KKLSATFRGHPLDGTQITFPEGYRAVLVTETKRPLTEDAERKFQVTG 124
           KK  +   G+P     +     +  ++V +TK+ + E+A ++    G
Sbjct: 17  KKSYSIENGYPARRRSLVDDARFETLVVKQTKQSVLEEARQRANDAG 63


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 59  LHKSSFFDGFLSQFQYVKFLKPPV 130
           + K  +FDGF  +    + L+PP+
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPI 643


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 216 SVYRQEDAPETLPIVFLS 269
           S++RQ D  +  P +F+S
Sbjct: 391 SIFRQTDDHQNSPSIFIS 408


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 318 IKRSSFVFYPFCF*RIN 268
           I R S VF+PF F  +N
Sbjct: 401 IDRVSRVFFPFLFAVLN 417


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 9   LVNRHVSLPQS 41
           L+NR VS+PQS
Sbjct: 702 LMNRAVSVPQS 712


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 246 TLPIVFLSLFFRNKMD 293
           TLPI F  L   NK+D
Sbjct: 366 TLPITFRCLEENNKID 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,204
Number of Sequences: 438
Number of extensions: 1436
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)