Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d06
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 31 0.14
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 2.4
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 3.1
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 4.1
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 26 5.5
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 26 5.5
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 7.2
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 7.2
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 7.2
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 746 HHILSPGDPSLFSSSRPC-ELYYYKC*NVITSEPPGPEQCLSWHA 615
H++L PS S+ R E +++K N E GPE+C++W A
Sbjct: 259 HYVLRSVHPSPLSAHRGFFECHHFKKTNEWLEEQYGPEKCINWSA 303
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 233 IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 117
+IY+ Y Y + S++++ R V Y NK FP+
Sbjct: 49 LIYLLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFFPR 87
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 231 NSKSTSGRAVVPKFIM--KRNTPAAGETGPWASLSGRNGDPL 350
N +S+ ++ + KF + + +TP G T P A S RN PL
Sbjct: 363 NGRSSPKKSFLSKFKLTSRPSTPNVGNTAPDALSSPRNDSPL 404
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 237 WNYIYIHKYVSVQIDNFDN 181
W YI +HK V I +FDN
Sbjct: 17 WGYIDVHKIKEVHIYDFDN 35
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = -2
Query: 454 FGYNFTVVKHLENFEILLKVNXXXXXXXXXXXXVCSGSPLRPDNEAHGPVSPAAGVFRFI 275
FG+ + V L N E +++ SP+ P +E+ AG R+
Sbjct: 459 FGHEYHVNVTLFNGETVVEYEDAIGHIFASTAKTLEPSPVSPYDESSDAYKKLAGAIRYT 518
Query: 274 INFGTTALPDVL 239
GT+ P ++
Sbjct: 519 FGDGTSVTPALM 530
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 270 ILGPLPFLTYFWNY 229
IL +PFL YFW+Y
Sbjct: 222 ILFSIPFLAYFWSY 235
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 658 RQSRPVPNSACRGTPRVPLPSP 593
+Q+ P PNS CR P PL SP
Sbjct: 44 KQNTPSPNSECR--PLTPLNSP 63
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 233 IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 117
+IY+ Y Y + S +++ R V Y NK FP+
Sbjct: 49 LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 233 IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 117
+IY+ Y Y + S +++ R V Y NK FP+
Sbjct: 49 LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 472 LERRTPFGYNFTVVKHLENFEILLKVN 392
+ RR P Y +TV+KHL EIL + N
Sbjct: 668 VRRRFPNAYGWTVIKHLT--EILFEQN 692
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 233 IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 117
+IY+ Y Y + S +++ R V Y NK FP+
Sbjct: 49 LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,583
Number of Sequences: 5004
Number of extensions: 59864
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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