Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d06
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0019 + 12311674-12311886,12312746-12312878,12312918-123131... 31 1.4
11_01_0333 + 2490132-2491007 31 1.4
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 31 1.4
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923... 30 1.9
04_04_0232 + 23794109-23794399,23795290-23796621 30 2.5
11_01_0184 - 1444246-1444434,1446291-1446719 29 3.3
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350 29 3.3
05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858... 29 3.3
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 29 4.3
01_06_0890 - 32750722-32750732,32750800-32750986 29 4.3
08_02_0045 - 11560147-11560434,11560949-11560960,11561079-115611... 29 5.7
01_04_0067 + 15675138-15675935 29 5.7
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 28 10.0
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 28 10.0
>11_04_0019 +
12311674-12311886,12312746-12312878,12312918-12313125,
12313342-12313558,12313564-12313848
Length = 351
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 652 SRPVPNSACRGTPRVPLPSPP 590
S P P CR P+ P PSPP
Sbjct: 323 SAPKPKKVCREKPKTPAPSPP 343
>11_01_0333 + 2490132-2491007
Length = 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 709 RLLDLANFTTISVEML*RQSRPVPNSACRGTPRVPLPSPP 590
+L+D A+FT I E+ ++ PV +S R R P PSPP
Sbjct: 36 KLVDPASFTEIFGELHFQEKPPVVDSLARAAAR-PSPSPP 74
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALFGTG 647
R+ PP A P DARA + V GE GVP A+FG G
Sbjct: 355 RATPPRKGEMAAPADARARRKGAAGGDVDEEEGEAGAGNGVP--AIFGRG 402
>07_01_1052 -
9234506-9235037,9235148-9235849,9236169-9236313,
9236478-9237069
Length = 656
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 655 QSRPVPNSACRGTPRVPLPSPP 590
QS P+P R P+ P PSPP
Sbjct: 174 QSAPIPKKVWREKPKTPAPSPP 195
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 632 CLSWHAARPPPLSSPVGDVTRDA 564
C SW AA PPP S P+ V A
Sbjct: 136 CASWRAALPPPTSRPLAPVADTA 158
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 492 PLRSAPPADENAAYPRDARAASRPRVTRHVAYR-GGEGRGTRGV 620
P R A P D R RV R V R GG GRG RGV
Sbjct: 4 PYRRASWWGTRGYIPSDDAGRRRSRVARGVGVRGGGAGRGRRGV 47
>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
Length = 576
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -2
Query: 727 ETRLCSRLLDLANFTTISVEML*RQSRPVPNSACRGTPRVPLPS 596
+ R +RLL+L T+ +++ R S+ +P+++ R PR+ P+
Sbjct: 90 QKRDAARLLELEALHTLFDDLIQRASQCLPSTSTRAAPRIAAPA 133
>05_03_0118 -
8586731-8587220,8587331-8587846,8588842-8588906,
8589483-8589989
Length = 525
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 803 QGRAAGLRVHRRGR-TPH*DHHILSPGDPSLFSS 705
+GR G R H GR PH HH+ GD +F S
Sbjct: 292 RGRGLGPRAHFDGRFEPHGHHHVEEYGDNDVFFS 325
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQA---LFGTG 647
R P AA PRD S P V RHV RG R +G+ + LFG+G
Sbjct: 113 REEGPVYRLAAGPRDLVVVSDPAVARHV-LRGYGSRYEKGLVAEVSEFLFGSG 164
>01_06_0890 - 32750722-32750732,32750800-32750986
Length = 65
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 507 PPADENAAYPRDARAASRPRVTRHVAYRGGEGRG-TRGVPRQALFGTGRL 653
P A +++ RD SRP V +G T VPR A++G GR+
Sbjct: 3 PAASSSSSSSRDRLTISRPTEKDDVVEEKRDGGDVTAAVPRLAVYGAGRV 52
>08_02_0045 -
11560147-11560434,11560949-11560960,11561079-11561102,
11561562-11561801
Length = 187
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 776 HRRGRTPH*DHHILSPGDPSLFSSSRPCELY 684
H GR PH DHH +S S +S PC ++
Sbjct: 53 HHGGRKPH-DHHTVSACIASPIASLTPCPIF 82
>01_04_0067 + 15675138-15675935
Length = 265
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 546 RAASRPRVTRHVAYRGGEGRGTRGVPRQALFGTGR 650
R RP V R VA GG G G G+ +++ G+G+
Sbjct: 128 RRCRRPNVRRTVAEGGGGGGGAGGLWKKSWTGSGK 162
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 591 PCRRRDA*RAGVTRRVRHAGRPHSRQPAARSGAVTLCKVSS 469
P RR A + G R V GR S +PAA V +CK S
Sbjct: 531 PNRRLSAHQNGGGRSVSRDGRRDSGRPAAPVNYVAICKEES 571
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 625 RGTPRVPLPSPPL 587
RGTPR P P+PPL
Sbjct: 45 RGTPRTPRPTPPL 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,485
Number of Sequences: 37544
Number of extensions: 469600
Number of successful extensions: 1822
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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