Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d06
(803 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK000226-1|BAA91021.1| 651|Homo sapiens protein ( Homo sapiens ... 33 1.2
BC125056-1|AAI25057.1| 370|Homo sapiens MTCH1 protein protein. 31 3.7
X83412-1|CAA58319.1| 171|Homo sapiens mucin protein. 31 4.9
BC110914-1|AAI10915.1| 372|Homo sapiens mitochondrial carrier h... 31 4.9
BC040659-1|AAH40659.2| 409|Homo sapiens MTCH1 protein protein. 31 4.9
BC009962-1|AAH09962.2| 365|Homo sapiens MTCH1 protein protein. 31 4.9
BC000702-1|AAH00702.2| 348|Homo sapiens MTCH1 protein protein. 31 4.9
AL122034-11|CAI23306.1| 372|Homo sapiens mitochondrial carrier ... 31 4.9
AL122034-10|CAI23305.1| 389|Homo sapiens mitochondrial carrier ... 31 4.9
AF192559-1|AAF12793.3| 389|Homo sapiens mitochondrial carrier h... 31 4.9
AF189289-1|AAF07936.1| 371|Homo sapiens presenilin-associated p... 31 4.9
AF176006-1|AAD52644.3| 372|Homo sapiens mitochondrial carrier h... 31 4.9
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 6.4
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 6.4
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 6.4
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 6.4
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 6.4
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 6.4
>AK000226-1|BAA91021.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ20219 fis, clone COLF3371. ).
Length = 651
Score = 33.1 bits (72), Expect = 1.2
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 630 PVVARRASPSPLLPCRRRDA*RAGVTRRVRHAGRPHSRQPAARSGAVTLCKV--SSRDGL 457
P+ A A P P P + R+G + R H G H Q AA G V C V RDG
Sbjct: 576 PMPAEPAPPGPASPGGAPEPPRSGPSWRKPHGGEVHPDQGAAARGRVQGCLVWRGHRDGG 635
Query: 456 R 454
R
Sbjct: 636 R 636
>BC125056-1|AAI25057.1| 370|Homo sapiens MTCH1 protein protein.
Length = 370
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 456 GVRLSS*LYTTSPLRSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQAL 635
GVR + + R PPA + A+PR R A++P R GG G G +AL
Sbjct: 25 GVRGGAAAGVEARARDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEAL 82
Query: 636 F 638
F
Sbjct: 83 F 83
>X83412-1|CAA58319.1| 171|Homo sapiens mucin protein.
Length = 171
Score = 31.1 bits (67), Expect = 4.9
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALFGTGR 650
RS+P AD+ A R+ AA RP+ R A G+ RG+ P GTG+
Sbjct: 96 RSSPSADQQRAQDREEEAA-RPQ--RRPAAGTGQRRGSAAAPVPTSSGTGQ 143
>BC110914-1|AAI10915.1| 372|Homo sapiens mitochondrial carrier
homolog 1 (C. elegans) protein.
Length = 372
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 41 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 85
>BC040659-1|AAH40659.2| 409|Homo sapiens MTCH1 protein protein.
Length = 409
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 23 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 67
>BC009962-1|AAH09962.2| 365|Homo sapiens MTCH1 protein protein.
Length = 365
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 34 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 78
>BC000702-1|AAH00702.2| 348|Homo sapiens MTCH1 protein protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 17 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 61
>AL122034-11|CAI23306.1| 372|Homo sapiens mitochondrial carrier
homolog 1 (C. elegans) protein.
Length = 372
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 41 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 85
>AL122034-10|CAI23305.1| 389|Homo sapiens mitochondrial carrier
homolog 1 (C. elegans) protein.
Length = 389
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 41 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 85
>AF192559-1|AAF12793.3| 389|Homo sapiens mitochondrial carrier
homolog 1 isoform b protein.
Length = 389
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 41 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 85
>AF189289-1|AAF07936.1| 371|Homo sapiens presenilin-associated
protein protein.
Length = 371
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 23 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 67
>AF176006-1|AAD52644.3| 372|Homo sapiens mitochondrial carrier
homolog 1 isoform a protein.
Length = 372
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 498 RSAPPADENAAYPRDARAASRPRVTRHVAYRGGEGRGTRGVPRQALF 638
R PPA + A+PR R A++P R GG G G +ALF
Sbjct: 41 RDPPPA--HRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALF 85
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 602 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 602 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 602 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 567 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 620
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 392 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 445
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 654 RAARSRTVPVVARRASPSPLLPCRRRDA*RAGVTRR------VRHAGRPHSRQPAAR 502
R +RSRT ARR P RRR R+ V RR R +GR SR PA R
Sbjct: 650 RRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 703
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,093,062
Number of Sequences: 237096
Number of extensions: 2458133
Number of successful extensions: 6343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6317
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -