Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d04
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1082 - 8847795-8848033,8848511-8848724 32 0.64
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 31 1.5
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 29 4.5
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 6.0
04_03_0074 - 10705413-10705523,10705602-10706330 29 6.0
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 29 6.0
12_01_0060 - 499291-501228 28 7.9
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223 28 7.9
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 7.9
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 180 WFLQPTKYENDVLFFIYNREYNDALKLG 97
W T Y DVL F YN+EY+D +G
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = -3
Query: 765 SCVLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNV 586
S L+ S G +GS+ ++ LE N I+T D +RQ L S++ N+
Sbjct: 1126 SSALSYSLGWLSPPSGSVIAAQL-LELGKNNEIVT---DQVLRQELALVMPKIYSLLSNL 1181
Query: 585 VNNLIIDKSRNTMEYCYKLWVGNG 514
+ + +D + +E C +WVG+G
Sbjct: 1182 IGSDEMDIVKVVLEGCRWIWVGDG 1205
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 426 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSS 250
+AL GP L P N A+G G E S + + W + + N ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 16 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 117
PGE +R T + S CHT + V T + IV
Sbjct: 1377 PGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410
>04_03_0074 - 10705413-10705523,10705602-10706330
Length = 279
Score = 28.7 bits (61), Expect = 6.0
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -2
Query: 397 SRERETCIRRW*GKEQRPHQLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRP-C 221
SR R R K Q PHQL G+++ Q+ + + F D + HSR
Sbjct: 157 SRARSEAYRLLQTKNQHPHQLGTAGYAGKEEEWQQEDEEAEESNTPLVFGD-IPHSRARN 215
Query: 220 YIRHQHRRHHQGAV-VPPAHEVRKRRPVLHLQSRVQRCFEA 101
+ R +++++ G + +P + R R + L + Q EA
Sbjct: 216 WARARYQKNVDGTIFMPYPEDQRVYRAINELVAEQQASQEA 256
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 553 VPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAH 714
+P L N VV ++ AL V+V+ +S G+D +VQ +F V AH
Sbjct: 322 LPVLGNVTVVTLVILPLALIFVVVWAVHQNSPFAWVGQDLMVQCNDDFLVMFAH 375
>12_01_0060 - 499291-501228
Length = 645
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 16 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 117
PGE +R T + S CHT + + T + IV
Sbjct: 592 PGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625
>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
Length = 219
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 628 QALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAGADGEHARREHH 777
Q T + + A Q LE F+ A A G GADG R HH
Sbjct: 64 QGATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 216 FGTNTADTTREQWFLQPTKYENDVLFFIYNRE 121
FG +T+ E LQP K EN +LF + R+
Sbjct: 753 FGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,350
Number of Sequences: 37544
Number of extensions: 432044
Number of successful extensions: 1494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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