Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16d04
(830 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2265|AAF53230.1| 255|Drosophila melanogaster CG16800-P... 33 0.48
AY484701-1|AAR85347.1| 881|Drosophila melanogaster dysfusion pr... 31 2.6
AE014297-3920|AAF56569.3| 881|Drosophila melanogaster CG32474-P... 31 2.6
AB095028-1|BAE53416.1| 918|Drosophila melanogaster bHLH-PAS pro... 31 2.6
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm... 30 4.5
BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p pro... 30 4.5
AY129446-1|AAM76188.1| 1009|Drosophila melanogaster LD20608p pro... 30 4.5
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P... 30 4.5
AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-P... 30 4.5
AE014296-390|AAF47594.1| 553|Drosophila melanogaster CG12361-PA... 29 5.9
AY061123-1|AAL28671.1| 611|Drosophila melanogaster LD10456p pro... 29 7.8
AE014134-3589|AAF57260.3| 611|Drosophila melanogaster CG3278-PA... 29 7.8
>AE014134-2265|AAF53230.1| 255|Drosophila melanogaster CG16800-PA
protein.
Length = 255
Score = 33.1 bits (72), Expect = 0.48
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 721 RGHFSDAGADGEHARREHHEKFHYHS 798
+GH G GEH E HEK H HS
Sbjct: 78 KGHHDKEGKKGEHGEEEGHEKKHKHS 103
>AY484701-1|AAR85347.1| 881|Drosophila melanogaster dysfusion
protein.
Length = 881
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 358 KEQRPHQLEVHY-----LVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRH 194
++Q PHQ + H L +QQ LQ QH +Q + T + + P + QH +
Sbjct: 27 QQQHPHQQQQHLQHVLQLQQQQQQHLQQQQHHLQHQMHTHHNFQQHETSPTVSQQQHMQQ 86
Query: 193 HQGAVVPPAHEVRKRR 146
Q H ++++
Sbjct: 87 QQPQTTQQQHATQQQQ 102
>AE014297-3920|AAF56569.3| 881|Drosophila melanogaster CG32474-PA
protein.
Length = 881
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 358 KEQRPHQLEVHY-----LVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRH 194
++Q PHQ + H L +QQ LQ QH +Q + T + + P + QH +
Sbjct: 27 QQQHPHQQQQHLQHVLQLQQQQQQHLQQQQHHLQHQMHTHHNFQQHETSPTVSQQQHMQQ 86
Query: 193 HQGAVVPPAHEVRKRR 146
Q H ++++
Sbjct: 87 QQPQTTQQQHATQQQQ 102
>AB095028-1|BAE53416.1| 918|Drosophila melanogaster bHLH-PAS
protein similar to humanNXF protein.
Length = 918
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 358 KEQRPHQLEVHY-----LVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRH 194
++Q PHQ + H L +QQ LQ QH +Q + T + + P + QH +
Sbjct: 63 QQQHPHQQQQHLQHVLQLQQQQQQHLQQQQHHLQHQMHTHHNFQQHETSPTVSQQQHMQQ 122
Query: 193 HQGAVVPPAHEVRKRR 146
Q H ++++
Sbjct: 123 QQPQTTQQQHATQQQQ 138
>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
transmembrane protein protein.
Length = 3004
Score = 29.9 bits (64), Expect = 4.5
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = -3
Query: 639 RQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHI-VRKYFPYNFRLIMA 463
R Y G+ S + N+ ++ N Y W +GQ + V P+ FR
Sbjct: 2340 RMEFSYGVHGRISQTRTYTRNMAVNSYTNVKNYT---WDCDGQLVGVEAQEPWGFRYDDN 2396
Query: 462 GNFVKLIYRNYNLALKLGPTLDPANERLA-YGDGKEK 355
GN + L YR + ++ A +R+ +G+G+ K
Sbjct: 2397 GNLLSLTYRGNTIPMEYN-----AQDRIVKFGEGQYK 2428
>BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p
protein.
Length = 796
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 343 HQLEVHYLVGEQQSVLQDPQH*V-QPVLETKFDD*LQHSRPCYIRHQHRRHHQGAVVPP 170
HQ + H+ +QQS Q QH QP L+ + L P + Q ++ Q VVPP
Sbjct: 58 HQQQAHF-PHQQQSPQQQQQHSQHQPALKFSYATALPPPPPLQLFTQQQQQQQQTVVPP 115
>AY129446-1|AAM76188.1| 1009|Drosophila melanogaster LD20608p
protein.
Length = 1009
Score = 29.9 bits (64), Expect = 4.5
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = -3
Query: 639 RQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHI-VRKYFPYNFRLIMA 463
R Y G+ S + N+ ++ N Y W +GQ + V P+ FR
Sbjct: 345 RMEFSYGVHGRISQTRTYTRNMAVNSYTNVKNYT---WDCDGQLVGVEAQEPWGFRYDDN 401
Query: 462 GNFVKLIYRNYNLALKLGPTLDPANERLA-YGDGKEK 355
GN + L YR + ++ A +R+ +G+G+ K
Sbjct: 402 GNLLSLTYRGNTIPMEYN-----AQDRIVKFGEGQYK 433
>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
protein.
Length = 3004
Score = 29.9 bits (64), Expect = 4.5
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = -3
Query: 639 RQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHI-VRKYFPYNFRLIMA 463
R Y G+ S + N+ ++ N Y W +GQ + V P+ FR
Sbjct: 2340 RMEFSYGVHGRISQTRTYTRNMAVNSYTNVKNYT---WDCDGQLVGVEAQEPWGFRYDDN 2396
Query: 462 GNFVKLIYRNYNLALKLGPTLDPANERLA-YGDGKEK 355
GN + L YR + ++ A +R+ +G+G+ K
Sbjct: 2397 GNLLSLTYRGNTIPMEYN-----AQDRIVKFGEGQYK 2428
>AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-PA
protein.
Length = 1784
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 343 HQLEVHYLVGEQQSVLQDPQH*V-QPVLETKFDD*LQHSRPCYIRHQHRRHHQGAVVPP 170
HQ + H+ +QQS Q QH QP L+ + L P + Q ++ Q VVPP
Sbjct: 232 HQQQAHF-PHQQQSPQQQQQHSQHQPALKFSYATALPPPPPLQLFTQQQQQQQQTVVPP 289
>AE014296-390|AAF47594.1| 553|Drosophila melanogaster CG12361-PA
protein.
Length = 553
Score = 29.5 bits (63), Expect = 5.9
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2
Query: 355 EQRPHQLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRHHQGA 182
+Q HQ + H+ +QQ PQH QP+ QHS P H H HH GA
Sbjct: 2 QQHSHQYQQHH---QQQQPHSHPQH--QPLAVPGH----QHSHPH--SHHHHHHHPGA 48
>AY061123-1|AAL28671.1| 611|Drosophila melanogaster LD10456p
protein.
Length = 611
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 269 WLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSP 373
+LY VLW+L+Y +F V L + L + +P
Sbjct: 208 YLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAP 242
>AE014134-3589|AAF57260.3| 611|Drosophila melanogaster CG3278-PA,
isoform A protein.
Length = 611
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 269 WLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSP 373
+LY VLW+L+Y +F V L + L + +P
Sbjct: 208 YLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAP 242
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,270,954
Number of Sequences: 53049
Number of extensions: 756716
Number of successful extensions: 3895
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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