Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d04
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    29   3.1  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    29   5.4  
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical ...    29   5.4  
U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical p...    28   7.1  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    28   7.1  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 683 NCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTL 504
           NC   +    TT  S  +  T T A +                T  ST  S  ++TDST 
Sbjct: 171 NCNVLTDIPVTTTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTT 230

Query: 503 SESTSPITLDSS 468
           +EST+  T +S+
Sbjct: 231 TESTTESTTEST 242



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -1

Query: 692 SRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATD 513
           S    TTA+S   +T+ S  +  T +   +                T  ST  S  ++TD
Sbjct: 188 SSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTD 247

Query: 512 STLSESTSPIT 480
           ST +ESTS  T
Sbjct: 248 STTTESTSTST 258


>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = -3

Query: 396 PANERLAYGDGKEKNSDLI--SWKFITLW----ENNRVYFKIHNTKYN-QYLKLSSTTDC 238
           PA + +   D K    DL+  S  ++ LW    +NN     + NT    +Y    ++ D 
Sbjct: 204 PATKIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNACIESLLNTNRTAEYCAPLTSFDW 263

Query: 237 NTQDRVIFGTNTADTTREQWFLQ 169
           N  D  + GT++ DTT   W L+
Sbjct: 264 NELDMNLIGTSSIDTTCTVWQLE 286


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = -3

Query: 789 MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 616
           M+FL + + CVLAV+A   +  S       ++  +   Y S      + A  Q ++Y +N
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60

Query: 615 QGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQH 508
           Q  GS  Q   N +     +N+ +Y     + N Q+
Sbjct: 61  QQYGSTAQYNQNQM--QNQQNSNQYSTTSNMNNQQN 94


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 709 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 807
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 709 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 807
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = -1

Query: 701 TKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGS 522
           T +S  + +T +S VTTT ++     T T    P               TP +T+T+  +
Sbjct: 276 TTSSTTSTSTTTSVVTTTTVTSTTEPT-TSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTT 334

Query: 521 ATDSTLSESTSPIT 480
           +  +T   +T P T
Sbjct: 335 SASTTTISTTKPPT 348


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 360 EKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQ 181
           EKN D    K     + N + +   +T Y   + L S  DCN     +F  N ADT  ++
Sbjct: 115 EKNPDFFKMK-----DGNHIVYDGQSTLYTT-INLFSELDCNQTKSKVFQINGADTGNDE 168


>AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical
           protein Y54G11A.4 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 216 FGTNTADTTREQWFLQPTKYENDVLFFIYNREYNDALKL 100
           F   T D  R+ W L    Y +  LF I + EY  AL++
Sbjct: 236 FMYKTEDDWRQGWMLAAHNYWHTALFHIESAEYEPALEI 274


>U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical
           protein M03F4.7b protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 706 TAHASRGHFSDAGADGEHARREHHEKFHYH 795
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 706 TAHASRGHFSDAGADGEHARREHHEKFHYH 795
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 162 KYENDVLFFIYNREYND 112
           KY N    F YNREYND
Sbjct: 29  KYNNPPFCFAYNREYND 45


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 706 TAHASRGHFSDAGADGEHARREHHEKFHYH 795
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 214 RHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCFE 104
           +H H+ HH  +++PP      R P L   S   R FE
Sbjct: 854 QHHHQSHHHPSLIPPT-TTSIRSPTLGPPSSQDRSFE 889


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical protein
            C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 214  RHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCFE 104
            +H H+ HH  +++PP      R P L   S   R FE
Sbjct: 920  QHHHQSHHHPSLIPPT-TTSIRSPTLGPPSSQDRSFE 955


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 206 LVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASL 385
           L  NI+    +    + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   
Sbjct: 7   LSSNISYDDPISFECDTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFREN 66

Query: 386 SF 391
           SF
Sbjct: 67  SF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,473
Number of Sequences: 27780
Number of extensions: 368069
Number of successful extensions: 1272
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)