Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d02
         (188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    19   7.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    19   7.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    19   7.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    19   7.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    18   9.5  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 110 YNFINMNRSPTCRK 69
           YN+ N N +  C+K
Sbjct: 98  YNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 110 YNFINMNRSPTCRK 69
           YN+ N N +  C+K
Sbjct: 98  YNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 110 YNFINMNRSPTCRK 69
           YN+ N N +  C+K
Sbjct: 98  YNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 110 YNFINMNRSPTCRK 69
           YN+ N N +  C+K
Sbjct: 98  YNYNNNNYNNNCKK 111


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +2

Query: 50  SCNNIW 67
           SCNN W
Sbjct: 100 SCNNYW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,217
Number of Sequences: 438
Number of extensions: 332
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)