Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16d01
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     30   1.3  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   1.7  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   5.3  
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    27   7.1  
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562...    27   9.3  
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    27   9.3  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +3

Query: 303 TFSTSRQHESFRHVTELFRHIKRYFSFV-EHLHNFSHWHGVFFKYDKFIRIADNLVLTSG 479
           +FS  R     R ++  +  +     F+     +F HW     K +KF R  DNL+L   
Sbjct: 21  SFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNLLLIRS 75

Query: 480 EFSCEPVQLEEFH 518
           +      QL  FH
Sbjct: 76  KVDLHTFQLYWFH 88


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 503 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 390
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -1

Query: 455 RNSNEFVIFKEDSVPMTEIMKMLD 384
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 311 TEGGFPFQLFVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 189
           TE   P    +F+  FDN G  LAPF  S + D K +  PL+
Sbjct: 433 TEKRRPCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474


>03_05_0096 +
           20754478-20754584,20755548-20755677,20756212-20756268,
           20756741-20756794,20757610-20758287
          Length = 341

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 TSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWH 416
           +S +H+ FR    +   +K + + V+H+ N + W+
Sbjct: 244 SSLEHDGFRDWRHISERLKEHKASVKHITNMTSWN 278


>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 66  IRLCVIRRNIEFVREPFTLVVNENILEI 149
           I+  V+ +N+EF R P    +N   +EI
Sbjct: 76  IKCAVLEKNVEFTRHPRAHFINNRTMEI 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,162
Number of Sequences: 37544
Number of extensions: 294953
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)