Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c21
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.52 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.8  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 394  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 296
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 771 VFFFFLCLINYIVMMKRTILPVRMFTDVCS 682
           +F F  CL+  + + + +I  +R    VC+
Sbjct: 5   IFIFAFCLVGILAVSEESINKLRKIESVCA 34


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 170 KDLAGRNVESCFSLTVKQSK-PAVLNVLGSVT 78
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 547 WCNSFK*WNVQCNLDN 500
           W N  + WN++ N+D+
Sbjct: 57  WYNEGQAWNIEANIDS 72


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 547 WCNSFK*WNVQCNLDN 500
           W N  + WN++ N+D+
Sbjct: 57  WYNEGQAWNIEANIDS 72


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 718 CTLHHNDIIN*AKEEKKHLFQHYHSST 798
           CTL  N +I   K EK+   +   SST
Sbjct: 85  CTLDGNKLIQVQKGEKQTTIEREFSST 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,102
Number of Sequences: 438
Number of extensions: 4984
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)