Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c20
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    29   0.019
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.40 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.54 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.7  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 0.019
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -3

Query: 239 SNQGYHRQRFIANESRSHRDKWRCRCYQCDSSLKKRERGGTELPNTH-IWSKFLNNFNF- 66
           S + Y R R    E  S++++   R Y+  S  + R+R   E    H I S   NN+N+ 
Sbjct: 35  SRKRYSRSR--EREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYN 92

Query: 65  ------IHLDNYRPAMYR*NII 18
                 ++ +NYR   Y  N I
Sbjct: 93  NNNYKKLYCNNYRKLYYNINYI 114


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
 Frame = -3

Query: 239 SNQGYHRQRFIANESRSHRDKWRCRCYQCDSSLKKRERGGTE----------LPNTHIWS 90
           S + Y R R    E +S++++   R Y+  S  + R+R   E          L N + +S
Sbjct: 268 SRKRYSRSR--EREQKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYKYS 325

Query: 89  KF--LNNFNFIHLDNYRPAMYR*NIIVFI 9
            +   NN+N  + +NY   +Y  N I+ I
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 227 YHRQRFIANE-SRSHRDKWRCRCYQCDSSLKKRERGGTELPNTHIWSKFLNNFNFIHLDN 51
           Y + R  + E SR   ++ R R  +  SSL  +        N + ++   NN+N  + +N
Sbjct: 289 YRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNN 348

Query: 50  YRPAMYR*NII 18
           Y+   Y  NII
Sbjct: 349 YKKLYY--NII 357


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -3

Query: 176 WRCRCYQCDSSLKKRERGGTELPNTHIWSK 87
           WR  C +C  S    +    +LP    W K
Sbjct: 371 WRLTCRKCFKSRTNLDPSNRKLPAPANWKK 400


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 190 VTVTSGGVGATNVTLHLKSERGEGL 116
           V++    +  TN  +++  E+GEGL
Sbjct: 192 VSLAVQAIDRTNTMVYIADEKGEGL 216


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = -3

Query: 227 YHRQRFIANESRSHRDKWRCRCYQCDSSLKKRERGGTELPNTHIWSKFLNNFNFIHLDNY 48
           Y  +R       + +++ R R  +  S   K       L N + ++   NN+N  +  NY
Sbjct: 50  YKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNY 109

Query: 47  RPAMYR*NII 18
           +   Y  NII
Sbjct: 110 KKLQYY-NII 118


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 367 RYLTRKQRIE 396
           RYLTR++RIE
Sbjct: 31  RYLTRRRRIE 40


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 367 RYLTRKQRIE 396
           RYLTR++RIE
Sbjct: 31  RYLTRRRRIE 40


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 165 PTPPLVTVTSAFV 203
           P PP+ TVTSA V
Sbjct: 181 PEPPVPTVTSACV 193


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 351 WTEQK*IIC*SPQGKL 304
           WT+ + IIC +P G L
Sbjct: 213 WTQDEDIICSTPIGNL 228


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 367 RYLTRKQRIE 396
           RYLTR++RIE
Sbjct: 293 RYLTRRRRIE 302


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 351 WTEQK*IIC*SPQGKL 304
           WT+ + +IC +P G L
Sbjct: 160 WTQDEDVICSTPIGNL 175


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 110 PNTHIWSKFLNNFNFIHLDNYRPAMYR*NIIVFILI 3
           PN +I +  ++N ++I  +N    M   N  VFI I
Sbjct: 32  PNDNIRNTLISNGDYIEENNMPNGMQIWNDKVFITI 67


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 165 PTPPLVTVTSAFVRDKSLAMIP 230
           PTPP V V SA       A+ P
Sbjct: 52  PTPPSVPVGSAVAGTAGGALFP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,503
Number of Sequences: 438
Number of extensions: 2707
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)