Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c19
         (816 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K809 Cluster: Putative uncharacterized protein; n=2; ...    35   2.8  
UniRef50_Q480W7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q4YXN3 Cluster: Pb-fam-4 protein; n=4; Plasmodium (Vinc...    34   4.9  
UniRef50_Q8IJM1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_A5K809 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 378

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 392 NFHVFYFQPVVILVINYSI*QIRSFNTLLLS*ILYEHSYVGYIYFLVIFNTQYVWFNLFD 571
           N  +  F  ++I V+   I  +R+ N  L   I Y  +Y+  +Y L I+NT   W N++ 
Sbjct: 254 NIVINTFTIIIITVLLSYIHFLRTRNKTLKKIIFYITTYINLLYCLHIYNTFTYWLNIYL 313

Query: 572 SF 577
           +F
Sbjct: 314 NF 315


>UniRef50_Q480W7 Cluster: Putative uncharacterized protein; n=1;
           Colwellia psychrerythraea 34H|Rep: Putative
           uncharacterized protein - Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
          Length = 712

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 343 ISKLNLRENKKSVYSDKFSRVLFPTSSNFSYKL 441
           +S +N+  N KSV SDK  R + PT++N +Y+L
Sbjct: 40  LSMVNITLNSKSVISDKQGRFVIPTAANDTYQL 72


>UniRef50_Q4YXN3 Cluster: Pb-fam-4 protein; n=4; Plasmodium
           (Vinckeia)|Rep: Pb-fam-4 protein - Plasmodium berghei
          Length = 296

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +2

Query: 494 YEHSYVGYIYFLVIFNTQYVWFNLFDSFAHNNKSVFSEHVQCTALIFSSEKTCILRH*QK 673
           Y +     I + + FN   ++FNL+    HNN+      +    LIFS + T       K
Sbjct: 164 YPYLIKSRISYDIFFNLFKIYFNLYLINKHNNRLSIKSPIYIILLIFSHQITI-----SK 218

Query: 674 YNL-SITKNIMHFLH*FHTYKTFTIDTICITLII 772
           Y + S   N+++F+H       F +D++   +++
Sbjct: 219 YVIFSYINNLINFMHSSSLSDMFCLDSLTHQIVM 252


>UniRef50_Q8IJM1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1136

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 512 GYIYFLVIFNTQYVWFNLFDSFAHNNKSVFSEHVQCTALIFSSEKTCILRH*QKYN-LSI 688
           G IY L++ N Q    N      +NN  +  +  +   L+  S+ +  +R  Q ++   I
Sbjct: 688 GIIYHLLL-NGQNDHNNHNKDNNNNNAILKKKRKKKLHLLNDSDISMCIRIFQSFSKFDI 746

Query: 689 TKNIMHFLH*FHTYKTFTIDTICI 760
            KNI  FL+ +H Y  + I TICI
Sbjct: 747 IKNINMFLYYYHIYFPYDISTICI 770


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,457,120
Number of Sequences: 1657284
Number of extensions: 12887338
Number of successful extensions: 27486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27471
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)