Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c19
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   7.4  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   7.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.7  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 534 FLIHSMFGSIYSIHSPTII 590
           FLI ++   IY +HSP+II
Sbjct: 201 FLIETLHSDIYFLHSPSII 219


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 334 FVSISKLNLR---ENKKSVY-SDKFSRVLFPTSSNFSYKLLDLTNTQ 462
           F S  KL+LR   +N    Y +DK   V++    +FS KLL+ + T+
Sbjct: 318 FASAKKLHLRLTDDNLTIAYRNDKTGEVVYKDKFSFSNKLLEASYTK 364


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 677 NLSITKNIMHFLH*FHTYKTFTID 748
           +L   + +  FLH FH   TFTID
Sbjct: 287 DLLAARKVADFLHTFHHEHTFTID 310


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 425 ILVINYSI*QIRSFNTLLLS*ILYEHSYVGYIYFLVIFNTQYVWFNLFDSFAHN---NKS 595
           I V+     QIR +   +++  L E  YV Y ++L+    +YV   +FD  A     +K+
Sbjct: 589 IFVLGNKDEQIRQYRKTMVADKLMEEKYVHYSHYLIKKIMKYV-PEIFDGVAFEIEIDKA 647

Query: 596 VFS 604
           V+S
Sbjct: 648 VYS 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,069
Number of Sequences: 5004
Number of extensions: 64955
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)