Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c19
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_45307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 657 NMHVFSLEKIRAVHCTCSENTDLLLWANESNKL 559
           ++H + LE      C C  N DLL WA +  KL
Sbjct: 99  DLHKYGLEAGHQTGC-CRRNKDLLSWAKKKRKL 130


>SB_45307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 635 KKSEQYTARAQKILIYYCGRMNRIN*TKHTVY*K*LKNKCSRHTN 501
           KKS+ YT R  + +IY  G   +    KH      L N+CSRH +
Sbjct: 3   KKSQTYTFRHTESIIYEHGPSTQKTSHKHK-----LHNRCSRHNH 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,817,278
Number of Sequences: 59808
Number of extensions: 421985
Number of successful extensions: 1282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)