Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c19
         (816 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011135-1|AAR82802.1|  405|Drosophila melanogaster GM14490p pro...    29   5.8  
BT001788-1|AAN71543.1|  245|Drosophila melanogaster RH23428p pro...    29   5.8  
AY118289-1|AAM48318.1|  393|Drosophila melanogaster AT18469p pro...    29   5.8  
AE014297-3989|AAN14084.1|  393|Drosophila melanogaster CG5484-PB...    29   5.8  
AE014297-3988|AAF56617.1|  397|Drosophila melanogaster CG5484-PA...    29   5.8  
AE014297-3987|AAN14083.1|  402|Drosophila melanogaster CG5484-PC...    29   5.8  

>BT011135-1|AAR82802.1|  405|Drosophila melanogaster GM14490p
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 270 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 325


>BT001788-1|AAN71543.1|  245|Drosophila melanogaster RH23428p
           protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 110 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 165


>AY118289-1|AAM48318.1|  393|Drosophila melanogaster AT18469p
           protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 258 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 313


>AE014297-3989|AAN14084.1|  393|Drosophila melanogaster CG5484-PB,
           isoform B protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 258 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 313


>AE014297-3988|AAF56617.1|  397|Drosophila melanogaster CG5484-PA,
           isoform A protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 262 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 317


>AE014297-3987|AAN14083.1|  402|Drosophila melanogaster CG5484-PC,
           isoform C protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -2

Query: 395 NLSLYTDFLFSRKLSLDMLTNGYTFFLQCNIIIRIYIYTLFLKVPMKLCFFYTA*NFG 222
           +L+LY   + +   +LD+L   +T +   NI++ + + TLF K    +   YT+ +FG
Sbjct: 267 SLALYVMNVKTSLKTLDLLA--FTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSFG 322


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,710,665
Number of Sequences: 53049
Number of extensions: 590011
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)