Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c19
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z70208-9|CAA94140.1|  157|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 447 FNKYAALILYYCHEFCTNIRMSATFIF*LFLIHSMFGSIYSIHSPTIINQYFLS 608
           F  +A LI Y C      + + A+F+F L  +   FGS+Y  + P +++ + LS
Sbjct: 45  FCAFAELIFYDCFVIFF-LMIIASFVFVLLYLEFYFGSVY--NCPALLHLHTLS 95


>Z70208-9|CAA94140.1|  157|Caenorhabditis elegans Hypothetical
           protein F54B11.9 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 343 ISKLNLRENKKSVYSDKFSRVLFPTSSNFSY 435
           I++LN        Y  KF R+LF T  NF+Y
Sbjct: 29  ITELNTIRGIYGQYLYKFPRILFETGQNFTY 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,561
Number of Sequences: 27780
Number of extensions: 360521
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)