Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c18
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.8  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   2.3  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   4.0  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   7.1  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   7.1  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.3  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = -1

Query: 382 EKICKTGDIVLIQALPEKLTKLITH-EIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQT 206
           E++ K G+I+     P++++ +I + ++   +  F +I +   G + +  + +E  E + 
Sbjct: 91  EEVDKDGNIISASVAPQRISSVIDYADVFRSLPGFKNIENG--GNRDTSSRIEELSEEEI 148

Query: 205 ELYGRLKSTFNYN-KAPPRGWQDGKKDFTSKPT 110
                  ST N N KAP  G      +FTS PT
Sbjct: 149 N-----DSTKNINYKAPEMGSLPSNTEFTSTPT 176


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 199 TIQFVFLYLLYIAL*KLSCL*QGRLYRQTDKRLLLFHGLLTWLASQVTLGSGLCLQFCIF 378
           TI    L LL++     SC+ +G      D R+ L   ++      +T+ + L +QF + 
Sbjct: 381 TIDSFSLKLLFLKFMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILA 440

Query: 379 SLNR 390
             NR
Sbjct: 441 KSNR 444


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 486 VGTHCPSKRNFLAASATFLDISWLFF**FVL---LYSCILKIFLN 611
           VG HCP  R  +A+ +  + + W+ F   V+    +SC L  F++
Sbjct: 62  VGLHCPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVD 106


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 274 ITDPVTGKKVSK-EQYKEDIERQTELYGRLKSTFNYNKAP 158
           + DPVTG++VSK E  K + +R  EL    K       AP
Sbjct: 17  VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAP 56


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 302 KRSRLSVWRYNRPCYRQ 252
           KR++L  W   +PCY Q
Sbjct: 90  KRNKLIAWMRKKPCYEQ 106


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -1

Query: 361 DIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKE 224
           D +++   P+KL + +     + V+P  ++ +   G+K   E+ K+
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEEKKD 241


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 190 TFHTIQFVFLYLLYIA 237
           TFH I F FLYL  IA
Sbjct: 87  TFHRIPFQFLYLAVIA 102


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 383 RENMQNWRHSPDPSVT*EANQVNN 312
           RE++ +  HSP PSV+   N +NN
Sbjct: 121 RESLNSLCHSPAPSVSSCGNALNN 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,645
Number of Sequences: 5004
Number of extensions: 59089
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)