Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c18
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-8|AAB53829.1| 160|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF040655-11|AAB95040.1| 251|Caenorhabditis elegans Hypothetical... 31 0.70
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 29 2.8
AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical... 29 3.7
Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical pr... 28 4.9
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 28 6.5
U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated p... 28 6.5
U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated p... 28 6.5
U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated p... 28 6.5
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 28 6.5
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 28 6.5
L07143-1|AAB37089.2| 532|Caenorhabditis elegans P granule abnor... 27 8.6
AB120730-1|BAC87887.1| 532|Caenorhabditis elegans PGL-2 protein. 27 8.6
>U00048-8|AAB53829.1| 160|Caenorhabditis elegans Hypothetical
protein C05D11.10 protein.
Length = 160
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = -1
Query: 469 AKIRVKRLELDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALP--EKLTKLITHEIKE 296
A++R + E + L YF + ++ D + GD VLI+ + + ++H +
Sbjct: 34 AQVRCQMNEFNIYLKKYFARSFDFWALDKTSLGNIGDTVLIKQIDGSSRPKANVSHAVDR 93
Query: 295 VVYPFGDITDPVTGKKVSKEQYKEDIE 215
VV+ FG+I DPVTG+K+ + + ++I+
Sbjct: 94 VVFKFGNIVDPVTGRKIFNDTFADEID 120
>Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical
protein T19B10.8 protein.
Length = 733
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = -1
Query: 304 IKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKK 131
+ V++ + + D +TG++V ++ YKED++R + R K + N P + + G+K
Sbjct: 312 VSRVLWSYAENLDTLTGRQVVQKFYKEDVDRNIK---RAKLVRHVNDVPSKEIKIGEK 366
>AF040655-11|AAB95040.1| 251|Caenorhabditis elegans Hypothetical
protein T24E12.2 protein.
Length = 251
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -1
Query: 268 DPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKKDF 125
DP GKKV Q K + Q+ LYG +ST +YN P+ + K+D+
Sbjct: 155 DP-NGKKVVP-QIKMFVRNQSSLYGNQRSTKSYNLPWPKIRSEDKEDW 200
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 29.1 bits (62), Expect = 2.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Frame = -1
Query: 370 KTGDIVLIQALPEKLTKLITHEIK-EVVYPFG--DITDPVTGKKVSKEQYKEDIERQTEL 200
K +I+++ + TK ++ EVV P D+TD V K Y D+ +
Sbjct: 738 KLPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDKVANPNHEKAIY--DLIAVSRH 795
Query: 199 YGRLK----STFNYNKAPPRGWQDGKKDFTSKPTYTKFHVFDENDPY 71
YG L + YN + W D D ++ PTY ++ +DPY
Sbjct: 796 YGSLSGGHYTAIGYNDREQK-WFDFN-DSSANPTYPPAEPYESSDPY 840
>AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical
protein Y46G5A.22a protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 432 FSSNSNLFT----LIFAAFCLTVGTHCPSKRNFLAASATFLD 545
F S +N+FT +IFA++C +C S+R + +F+D
Sbjct: 238 FMSIANMFTRMDAIIFASYCEFAARYCRSRRLMCDVTCSFVD 279
>Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical
protein C08F8.6 protein.
Length = 380
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -1
Query: 385 SEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQT 206
+EK+ K ++ L + K TK +T KE+V + K+ KE+Y++D ++
Sbjct: 321 TEKVIKKKEVELAEGKSHKETKEVTKVSKEIVEEKKE-EKKEEKKEEKKEKYEDD--KKE 377
Query: 205 ELY 197
ELY
Sbjct: 378 ELY 380
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889
>U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated
protein 73, isoform d protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 208 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 243
>U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated
protein 73, isoform e protein.
Length = 633
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 289 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 324
>U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated
protein 73, isoform c protein.
Length = 928
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 294 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 329
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 616 ILFRNIFKIQEYSKTNH*KNNQEMSRNVADAARKFL 509
I+F NI I E+ KTN K ++ S N A F+
Sbjct: 1854 IIFANIVNILEFHKTNFLKEIEKCSENYEAAGAAFV 1889
>L07143-1|AAB37089.2| 532|Caenorhabditis elegans P granule
abnormality protein 2 protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 181 TFNYNKAPPRGWQDG--KKDFTSKPTYTKFHV 92
T N+ K P + W DG +K ++PT KF +
Sbjct: 437 TVNFRKIPQKDWLDGNLQKALKTEPTSEKFGI 468
>AB120730-1|BAC87887.1| 532|Caenorhabditis elegans PGL-2 protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 181 TFNYNKAPPRGWQDG--KKDFTSKPTYTKFHV 92
T N+ K P + W DG +K ++PT KF +
Sbjct: 437 TVNFRKIPQKDWLDGNLQKALKTEPTSEKFGI 468
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,433
Number of Sequences: 27780
Number of extensions: 316338
Number of successful extensions: 843
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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