Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c15
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   2.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   5.1  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   5.1  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    24   6.8  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    24   6.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   6.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   6.8  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   9.0  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 376  MFYTIARLPIDFSSFVILNKYLGLWRCH 293
            + Y  + L I  SSF+  N YL LW  H
Sbjct: 1996 LLYCASFLLIGISSFINENMYLRLWISH 2023


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 142 FGVPMTGFFIGKFLDDQETLRMTSFRD 62
           F VP++   +  +LDD+   R   FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 167
           D+ R   ILK    SR +    P I  P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 207 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 115
           +ESS+      PS++ LL SF   F   GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 318 NTSVYGVVTVPASESCEHSLSHHKHYAYFS*LEPHSQVESSTDQSIKWPSSASLLAS 148
           N+S   +    + +S +       H    S L PH+Q+    D  +  PSS S  +S
Sbjct: 134 NSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSS 190


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 162 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 254
           + K+AI +FD     +A  +PVKK K +A G
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 207 LASVVPVKKNKRNAYGGKDYAHKIP 281
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 75  VILKVSWSSRNL--PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFP 206
           +I + +W  + +  P+   ++   N     V  +  +L FD+  FP
Sbjct: 117 LIRRANWEKKEIGEPLFEAIMACINSRSIAVSEEATVLLFDMADFP 162


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141  NQMKRGVMPKMAILYFDLL-SFPLASVVPVKKNKRNAY 251
            NQ++R    + ++L+F LL +F    VVP+  +++ +Y
Sbjct: 1759 NQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSY 1796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,254
Number of Sequences: 5004
Number of extensions: 35494
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)