Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c15
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285...    30   0.52 
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    29   1.2  
08_02_0350 + 16123139-16124041                                         28   2.7  
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    27   3.6  
04_04_1377 - 33064906-33065607                                         27   6.3  

>01_06_0848 +
           32426550-32426613,32427013-32427167,32428470-32428526,
           32428877-32428930,32429349-32429418,32429951-32432034
          Length = 827

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
 Frame = +3

Query: 21  GSPSLTLPPNK---ADLSRKLVIL-KVSWSSRNLPMKNPVIGT-PNQM------KRGVMP 167
           GSPS++LP +    A LS  L     VS+ S NLP  NP+    PNQ       +  ++P
Sbjct: 242 GSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLP 301

Query: 168 KMAILYFDLLSFPLASVVPVKKNKRNAYGGKDYAHK----IPTQEL*QRHKP 311
            M      L + P++S++  ++ +R A      +H+    +P     Q H P
Sbjct: 302 NMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPSHQNYLNLPPHLFYQHHSP 353


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 74  RHPQGFLVIQKFAYEEPCHRNTKPNEARSDAED 172
           RH +  +VI +F YE+   R    +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210


>08_02_0350 + 16123139-16124041
          Length = 300

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 111 PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVP 224
           P   PV G  +++  GV+  + ++  DL  +P+A V+P
Sbjct: 197 PCLTPVAGLVDEVPNGVLFDVPMVVLDLDGWPMAHVLP 234


>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 45  PNKADLSRKLVILKVSWSSRN 107
           PNK +LSR L+++   W +RN
Sbjct: 427 PNKTNLSRLLIVMWQLWKARN 447


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 303 GVVTVPASESCEHSLSHHKHYAYFS*LEPHSQ 208
           G++  P +   E    HH H+ +   L+PH +
Sbjct: 166 GMMVAPTTHHRERQKHHHHHHHHHPHLQPHGE 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,250
Number of Sequences: 37544
Number of extensions: 230646
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)