Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c12
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    33   0.070
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    29   0.65 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   4.6  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 837 GNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
           GN V AA+  T+C       +  + GGG M +  PN T Q+L
Sbjct: 103 GNAVDAAIASTFCIGVVNFFSSGIGGGGFMLIKHPNETAQSL 144


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 418 TAKGYVLFGHQMGIESSGDFGNGFQNFILINCFILISILVTSR 546
           T +G     + MGIE++  F  GF  FI++  F L+ + + SR
Sbjct: 304 TLRGIKRISYMMGIETTNFFATGFSFFIILLFFSLL-VAMASR 345


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 755 PPPASNTATMNVGAGQYVSSRAAITTLPIIPPSRAAT 865
           PPP ++T++    +   +S+  + TT   IPP+  +T
Sbjct: 370 PPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 755 PPPASNTATMNVGAGQYVSSRAAITTLPIIPPSRAAT 865
           PPP ++T++    +    S+  + TT   IPP+  +T
Sbjct: 316 PPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = +1

Query: 739 EETHEAASGEQHGHNERRRRTVRVQ*GCDHD---VANYTT*SSCYH 867
           E THE +    H HN       +    CDH+   + N      C+H
Sbjct: 531 EHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHH 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,473,866
Number of Sequences: 5004
Number of extensions: 71467
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)