Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c12
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110...    32   0.69 
06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487...    29   4.8  
03_06_0671 + 35440190-35440374,35440620-35440664,35440702-35440867     29   6.4  
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988...    29   6.4  
10_02_0108 - 5361431-5362405                                           28   8.5  
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897...    28   8.5  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    28   8.5  

>08_02_0603 +
           19208177-19210033,19210581-19210618,19210937-19211059,
           19211471-19211852
          Length = 799

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 865 GSSSTRWYNW-QRRDRSPTGHVLSGADVHCGRVARRRR 755
           G  +  W  W QRR  +  G   +G DV CGR  RRRR
Sbjct: 690 GGGNAGWRGWRQRRWMADDGRA-AGGDVGCGRGRRRRR 726


>06_01_0667 +
           4878784-4878900,4879016-4879118,4879256-4879341,
           4879434-4879496,4879589-4879831,4880639-4880728,
           4881403-4881600
          Length = 299

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +2

Query: 734 GRKRHMRPPPAS-NTATMNVGA----GQYVSSRAAIT 829
           G++R  RPPPAS N A +N+ A    G   +SR A+T
Sbjct: 221 GKRRKQRPPPASHNVAGLNLAASFCFGFAFTSREAVT 257


>03_06_0671 + 35440190-35440374,35440620-35440664,35440702-35440867
          Length = 131

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 778 GRVARRRRPHVSLPAQHNATSFTITFHHSHRIKAVDRYTG 659
           G   +RR PH ++ A H++ S T  +  S    A+++++G
Sbjct: 6   GTANKRREPHKAVSAVHDSMSMTRLYMSSIAYAALEKWSG 45


>01_01_1224 -
           9888726-9888820,9889042-9889085,9889194-9889282,
           9889390-9889434,9889849-9889956,9890042-9890127,
           9890324-9890411,9890669-9890872,9891251-9891326,
           9891429-9891478,9891753-9891815,9891942-9891995,
           9892079-9892181,9892266-9892368,9892563-9892623,
           9892746-9892786,9893183-9893348
          Length = 491

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 792 PTFIVAVLLAGGGLMCLFLPNT 727
           P F+++VL AG  + C++LP T
Sbjct: 220 PCFVISVLAAGACVACIWLPET 241


>10_02_0108 - 5361431-5362405
          Length = 324

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 864 VAARLGG-IIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
           V+ ++GG ++G VV  A L T+ P P      +   G      LP+  R AL
Sbjct: 70  VSRKVGGELVGEVVDPAFLPTFHPVPREFEGAISRCGHFSLASLPDVDRWAL 121


>06_01_1093 -
           8970996-8971667,8971756-8971902,8971982-8972118,
           8972343-8972612,8972731-8972868,8974965-8975394
          Length = 597

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +1

Query: 484 GFQNFILINCFILISILVTSRSHTRFTELAINCPIKIS*NSRSVLPSARNVYDIYTGKNR 663
           GF+ F+L  C++++S   T     +FT+ A++  I I+  +   L     +Y I+ G++ 
Sbjct: 208 GFRVFLLTFCYVMVSGYNTG----KFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDL 263

Query: 664 YN 669
           +N
Sbjct: 264 HN 265


>02_05_0232 +
           27041793-27042087,27042822-27042943,27043098-27043219,
           27043601-27043705,27043828-27044257,27044356-27044517,
           27044565-27045260,27045349-27046128,27046441-27046654,
           27047621-27047981,27047993-27048140,27048276-27048419,
           27048784-27048888,27049749-27049794,27050089-27050255,
           27050338-27050490,27050654-27050950,27051053-27051220,
           27051298-27051363,27051451-27051927,27052031-27052768,
           27052935-27053120
          Length = 1993

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 797 GQYVSSRAAITTLPIIPPSRAATI 868
           G  + +R A TT+P IPPS A T+
Sbjct: 209 GHLICTREANTTVPAIPPSPAHTV 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,682,480
Number of Sequences: 37544
Number of extensions: 442795
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)