Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c12
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457086-1|CAG33367.1| 683|Homo sapiens SV2B protein. 40 0.015
BC030011-1|AAH30011.1| 683|Homo sapiens SV2B protein protein. 40 0.015
AB018278-1|BAA34455.2| 707|Homo sapiens KIAA0735 protein protein. 40 0.015
BC100827-1|AAI00828.1| 727|Homo sapiens synaptic vesicle glycop... 33 1.8
BC100826-1|AAI00827.1| 727|Homo sapiens synaptic vesicle glycop... 33 1.8
BC100825-1|AAI00826.1| 727|Homo sapiens synaptic vesicle glycop... 33 1.8
BC100824-1|AAI00825.1| 727|Homo sapiens synaptic vesicle glycop... 33 1.8
AB028977-1|BAA83006.1| 480|Homo sapiens KIAA1054 protein protein. 33 1.8
AB026898-2|BAA77625.1| 551|Homo sapiens organic-cation transpor... 31 5.4
AB010438-1|BAA76350.1| 551|Homo sapiens organic-cation transpor... 31 5.4
>CR457086-1|CAG33367.1| 683|Homo sapiens SV2B protein.
Length = 683
Score = 39.5 bits (88), Expect = 0.015
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ G I+GN + A+ + P + A L GGGL+ L LP T Q L
Sbjct: 635 KFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVL 682
>BC030011-1|AAH30011.1| 683|Homo sapiens SV2B protein protein.
Length = 683
Score = 39.5 bits (88), Expect = 0.015
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ G I+GN + A+ + P + A L GGGL+ L LP T Q L
Sbjct: 635 KFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVL 682
>AB018278-1|BAA34455.2| 707|Homo sapiens KIAA0735 protein protein.
Length = 707
Score = 39.5 bits (88), Expect = 0.015
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ G I+GN + A+ + P + A L GGGL+ L LP T Q L
Sbjct: 659 KFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVL 706
>BC100827-1|AAI00828.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ ++GN++ +L+ P + + +L GGL+ L LP+T Q L
Sbjct: 679 KAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 726
>BC100826-1|AAI00827.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ ++GN++ +L+ P + + +L GGL+ L LP+T Q L
Sbjct: 679 KAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 726
>BC100825-1|AAI00826.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ ++GN++ +L+ P + + +L GGL+ L LP+T Q L
Sbjct: 679 KAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 726
>BC100824-1|AAI00825.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ ++GN++ +L+ P + + +L GGL+ L LP+T Q L
Sbjct: 679 KAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 726
>AB028977-1|BAA83006.1| 480|Homo sapiens KIAA1054 protein protein.
Length = 480
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 855 RLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
+ ++GN++ +L+ P + + +L GGL+ L LP+T Q L
Sbjct: 432 KAAAVLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVL 479
>AB026898-2|BAA77625.1| 551|Homo sapiens organic-cation transporter
like 3 protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.4
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 864 VAARLGGIIGNVVIAALLDTYCPA-PTFIVAVLLAGGGLMCLFLPNTTRQALQ 709
+ +R+GGI+ +VI LL Y A P I L GL+C LP T Q L+
Sbjct: 458 IFSRIGGILTPLVI--LLGEYHAALPMLIYGSLPIVAGLLCTLLPETHGQGLK 508
>AB010438-1|BAA76350.1| 551|Homo sapiens organic-cation transporter
like 3 protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.4
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 864 VAARLGGIIGNVVIAALLDTYCPA-PTFIVAVLLAGGGLMCLFLPNTTRQALQ 709
+ +R+GGI+ +VI LL Y A P I L GL+C LP T Q L+
Sbjct: 458 IFSRIGGILTPLVI--LLGEYHAALPMLIYGSLPIVAGLLCTLLPETHGQGLK 508
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,229,664
Number of Sequences: 237096
Number of extensions: 2331641
Number of successful extensions: 4419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4418
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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