Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c12
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U23453-3|AAC46757.6|  297|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical
           protein B0252.3c protein.
          Length = 464

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 852 LGGIIGNVVIAALLDTYCPAPTFIVAVLL-AGGGLMCLF 739
           +G +IG + I  L D Y   P F+  VLL A GG++  F
Sbjct: 82  VGNMIGGMFIPPLADHYGRLPVFVATVLLMAVGGMISAF 120



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 858 ARLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
           +R GG++ +  ++ L   +  AP   ++++   GGL+ L LP T    L
Sbjct: 394 SRFGGML-SPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKL 441


>U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical
           protein B0252.3b protein.
          Length = 484

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 852 LGGIIGNVVIAALLDTYCPAPTFIVAVLL-AGGGLMCLF 739
           +G +IG + I  L D Y   P F+  VLL A GG++  F
Sbjct: 102 VGNMIGGMFIPPLADHYGRLPVFVATVLLMAVGGMISAF 140



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 858 ARLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
           +R GG++ +  ++ L   +  AP   ++++   GGL+ L LP T    L
Sbjct: 414 SRFGGML-SPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKL 461


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 776 ATMNVGAGQYVSSRAAITTLPIIPPSRAATIE 871
           A +NVG G Y   R A+TT P+ PPS   +++
Sbjct: 762 AVVNVGRGSY---RNALTTSPMTPPSAHTSMQ 790


>U23453-3|AAC46757.6|  297|Caenorhabditis elegans Hypothetical
           protein B0252.3a protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 858 ARLGGIIGNVVIAALLDTYCPAPTFIVAVLLAGGGLMCLFLPNTTRQAL 712
           +R GG++ +  ++ L   +  AP   ++++   GGL+ L LP T    L
Sbjct: 227 SRFGGML-SPYLSHLTAVHALAPAITLSLIAVSGGLLTLILPETLNTKL 274


>U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical
           protein F08D12.6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 346 RHKL*KIGTTIGHPMRLMLMISYNTAKGYVLF 441
           RHK+ KI  T+ HP+++ +  S N+   Y+ F
Sbjct: 45  RHKIRKINITVDHPLKIHI-FSSNSVMTYLSF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,993
Number of Sequences: 27780
Number of extensions: 407385
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)