Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c10
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    29   5.4  
01_03_0020 - 11698429-11699126,11699557-11700532                       28   9.5  

>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -2

Query: 724 DFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFS---LVETLAALVFDPTYS 554
           DF  + + I+ ILN  T  ++     K  PS +  K+N +F+   ++ T  ALV    Y 
Sbjct: 678 DFPPFMVLIIAILNDGTIMTISKDRVKPSPSPDSWKLNEIFAAGVVIGTYLALVTVLFYW 737

Query: 553 TIYART 536
           T+   T
Sbjct: 738 TVTRTT 743


>01_03_0020 - 11698429-11699126,11699557-11700532
          Length = 557

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 516 APVNTDTVRAYIVEYVGSKTRAANVSTRLNKEFILPI 626
           AP N D  + Y V +V +   A NV    NK++++ +
Sbjct: 262 APTNLDGTKGYFVIHVTAGVYAENVVVPKNKKYVMMV 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,393
Number of Sequences: 37544
Number of extensions: 341935
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)