Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c10
(770 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein pr... 52 2e-06
BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 4... 52 2e-06
BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein. 52 2e-06
BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 4... 52 2e-06
AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein. 52 2e-06
AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein. 52 2e-06
BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 52 3e-06
AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 52 3e-06
AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 52 3e-06
AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 50 9e-06
DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 ... 37 0.092
AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein pr... 37 0.092
AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens ... 37 0.092
AK075428-1|BAC11615.1| 555|Homo sapiens protein ( Homo sapiens ... 32 2.6
>BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein
protein.
Length = 461
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein.
Length = 463
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein.
Length = 461
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein.
Length = 463
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G F T M+ + + ++ LRS+ SK++ S E G + + + +ETL
Sbjct: 336 MTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLG 395
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLYSS-LMSIPAIAI 470
+ T++ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 396 GVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46,
member 2 protein.
Length = 475
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Frame = -2
Query: 757 AGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAA 578
+G++ + FV+ + Y V + T++RS SKLI GK+ + L L
Sbjct: 360 SGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTG 419
Query: 577 LVFDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 476
+V Y+ IY T+ +F G+ + SS +S AI
Sbjct: 420 VVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Frame = -2
Query: 757 AGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAA 578
+G++ + FV+ + Y V + T++RS SKLI GK+ + L L
Sbjct: 360 SGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTG 419
Query: 577 LVFDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 476
+V Y+ IY T+ +F G+ + SS +S AI
Sbjct: 420 VVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Frame = -2
Query: 757 AGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAA 578
+G++ + FV+ + Y V + T++RS SKLI GK+ + L L
Sbjct: 360 SGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTG 419
Query: 577 LVFDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 476
+V Y+ IY T+ +F G+ + SS +S AI
Sbjct: 420 VVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ31009 fis, clone HLUNG2000142, moderately
similar to Mus musculus putative thymic stromal
co-transporter TSCOT mRNA. ).
Length = 475
Score = 50.0 bits (114), Expect = 9e-06
Identities = 27/94 (28%), Positives = 45/94 (47%)
Frame = -2
Query: 757 AGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAA 578
+G++ + FV+ + Y + T++RS SKLI GK+ + L L
Sbjct: 360 SGALLLAFVKETYMFYIARAAMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTG 419
Query: 577 LVFDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 476
+V Y+ IY T+ +F G+ + SS +S AI
Sbjct: 420 VVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1
protein.
Length = 459
Score = 36.7 bits (81), Expect = 0.092
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G + F M+T + L+ +R+ SKL+ E G + S + V +LA
Sbjct: 343 ILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLA 402
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLY-SSLMSIPAIAI 470
L ++++Y T++ G +L + L+ IPA+ I
Sbjct: 403 MLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 440
>AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein
protein.
Length = 261
Score = 36.7 bits (81), Expect = 0.092
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G + F M+T + L+ +R+ SKL+ E G + S + V +LA
Sbjct: 145 ILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLA 204
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLY-SSLMSIPAIAI 470
L ++++Y T++ G +L + L+ IPA+ I
Sbjct: 205 MLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 242
>AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ30107 fis, clone BNGH41000198, weakly similar to
TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ).
Length = 459
Score = 36.7 bits (81), Expect = 0.092
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -2
Query: 760 LAGSISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLA 581
+ G + F M+T + L+ +R+ SKL+ E G + S + V +LA
Sbjct: 343 ILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLA 402
Query: 580 ALVFDPTYSTIYARTVSVFTGAVYLY-SSLMSIPAIAI 470
L ++++Y T++ G +L + L+ IPA+ I
Sbjct: 403 MLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 440
>AK075428-1|BAC11615.1| 555|Homo sapiens protein ( Homo sapiens
cDNA PSEC0119 fis, clone PLACE1002376, highly similar to
GPI transamidase component PIG-S. ).
Length = 555
Score = 31.9 bits (69), Expect = 2.6
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Frame = -2
Query: 769 LSKLAGSISMIFVQTDF--QMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSL 596
L++L G IS I ++ D ++Y + + + + LAS + S+E + L
Sbjct: 445 LAQLLGKISNIVIKDDVASEVYKA-VAAVQKSAEELASGHLASAFVASQEAVTSSELAFF 503
Query: 595 VETLAALVFDPTYSTIYARTVSVFTGAVYLYSSL-MSIPAIAILLWIFIKHRLELRNPEK 419
+L L++ P Y A+Y+ L M++P + L+ IF++ R R PEK
Sbjct: 504 DPSLLHLLYFPDYQKF----------AIYIPLFLPMAVPILLSLVKIFLETRKSWRKPEK 553
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,388,267
Number of Sequences: 237096
Number of extensions: 2018584
Number of successful extensions: 2714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2714
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -