Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c08
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 141 5e-34
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 97 2e-20
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 83 2e-16
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 64 1e-10
06_01_0671 - 4899611-4899829,4900870-4901448 64 1e-10
12_01_0809 + 7422137-7422251,7425578-7426353 33 0.33
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 31 0.76
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 30 1.8
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 30 2.3
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156... 29 3.1
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 29 4.1
01_06_1608 - 38612754-38616947,38617030-38617095 29 5.4
01_06_0460 + 29545030-29546377,29546463-29547085 29 5.4
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 28 9.4
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 28 9.4
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 141 bits (342), Expect = 5e-34
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Frame = -1
Query: 419 FSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIIDRNGTLRH 243
FSHLAW+ T RK GGLG ++ PL++D K ISK + VL+ D G ALRGLFIID+ G ++H
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 242 MSVNDLPVGRSVDETLRLVKAFQFA-DKHGEVCPAGWNPDTNADTIKPNPKDSKEYF 75
++N+L +GRSVDET+R ++A Q+ D EVCPAGW P ++KP+PK SKEYF
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDK--SMKPDPKGSKEYF 326
Score = 97.9 bits (233), Expect = 8e-21
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = -1
Query: 647 APKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAK 471
AP V APDF A AV + EF +KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSD+
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYD 126
Query: 470 DFAGIDCQVIGVSTDSEFS 414
+F ++ +++GVS DS +S
Sbjct: 127 EFEKLNTEILGVSIDSVWS 145
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 96.7 bits (230), Expect = 2e-20
Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = -1
Query: 344 DYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFA 168
+++K ++ V +D G ALRGLFIID+ G ++H ++N+L +GRSVDETLR ++A Q+
Sbjct: 63 EFEKINTEVLGVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 122
Query: 167 DKH-GEVCPAGWNPDTNADTIKPNPKDSKEYF 75
++ EVCPAGW P ++KP+PKDSKEYF
Sbjct: 123 QENPDEVCPAGWKP--GEKSMKPDPKDSKEYF 152
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -1
Query: 515 FVCPTELIAFSDKAKDFAGIDCQVIGVSTDS 423
FV E+ AFSD+ ++F I+ +V+GVS DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 83.0 bits (196), Expect = 2e-16
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Frame = -1
Query: 581 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 405
++++ DF G YV+LF +P DFT VC TEL A + AK+F +++G+S D SH
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 404 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 246
WI ++ P++AD ++ K +++ D G L R L I+ + ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175
Query: 245 HMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKD--SKEYF 75
+ VGR++DE +R V A Q A KH P W P I P D +KE F
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERV-VIPPGVSDDEAKEKF 233
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 64.1 bits (149), Expect = 1e-10
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Frame = -1
Query: 581 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 405
+++L DF G YV++F +P DFT VC TEL + A +F +++G S D SH
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 404 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-----GFAL--RGLFIIDRNGTLR 246
WI ++ P++AD ++ + +++ D G L R L I+ + ++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140
Query: 245 HMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSK 84
+ GR++ E LR A A +H P W P I P D +
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERV-VIPPGVSDEE 193
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 64.1 bits (149), Expect = 1e-10
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 2/197 (1%)
Frame = -1
Query: 764 SLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEF 585
S + HA +++QLS + A +VA+ + S+ + K AP+F+ + +
Sbjct: 85 STMMHAAAWLLLQQLSPA----AARVARAAD--DDSSVQVSK-GSAAPNFTLR---DQDG 134
Query: 584 NQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 405
+ LS F G+ VV++FYP D T C + AF D + F +VIG+S D SH
Sbjct: 135 RAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKE 194
Query: 404 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG--LFIIDRNGTLRHMSVN 231
+ +K K+ LL+D ++ K++ V D L G +++D+NG ++++ N
Sbjct: 195 F---KKK----YKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNN 247
Query: 230 DLPVGRSVDETLRLVKA 180
+ + ETL+++++
Sbjct: 248 QFQPEKHIGETLKILQS 264
>12_01_0809 + 7422137-7422251,7425578-7426353
Length = 296
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 100 FGLMVSALVSGFQPAGHTSPCLSANWKALTRRSVSSTER 216
FG+++ L++G P H SP SA++ A + S ++T+R
Sbjct: 169 FGVVLMELLTGRGPGDHASPSTSASFSAPSSSSAATTDR 207
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 31.5 bits (68), Expect = 0.76
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Frame = -1
Query: 602 VVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCP-TELIA-FSDKAKDFAGIDCQVIGVST 429
+++ + +++ +SD GKYV L F + V T L+A F +K K+ G +V+ VS
Sbjct: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKE-VGEKFEVVAVSL 239
Query: 428 DSE-------FSHLAWINTPRKD 381
DS+ F+ + W+ P++D
Sbjct: 240 DSDEELSNESFAGMPWLAIPQED 262
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = -1
Query: 608 TAVVNGEFNQLK-------LSDFTGKYVVLFFYPLDFTFVCPTELIAFS---DKAKDFAG 459
TA + G FN L DF GK+ +L+F +CP EL + DK K+ A
Sbjct: 178 TAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAK 237
Query: 458 IDCQVIGVSTDSE 420
++ + ++ D E
Sbjct: 238 MEVVPVFITVDPE 250
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 118 ALVSGFQPAG--HTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRV 255
A+ G P +P SA W AL RRS ++T R GR ++ RRV
Sbjct: 84 AMEGGEDPGSPPRAAPAPSACWSALCRRSPAAT-RKIGRKIQELNRRV 130
>06_03_0251 +
18715023-18715106,18715274-18715396,18715509-18715611,
18716061-18716134,18716208-18716288,18716370-18716522,
18717435-18717506,18718313-18718396
Length = 257
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 758 LTHAKMSFI--VKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQ-KPAPDFSATAVVNGE 588
+TH K F+ QL +VLS K+ ++ + K KP D SA+ + E
Sbjct: 131 VTHCKGHFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEE 190
Query: 587 FNQL 576
+NQL
Sbjct: 191 YNQL 194
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 79 YSLLSLGFGLMVSALVSGFQPAGHTSPCLSAN 174
YS +S G+G S+L +PAGHT CL A+
Sbjct: 375 YSPMSYGYG-NPSSLEESHRPAGHTRYCLVAS 405
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 740 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQK 630
SF+ +++SRS S +V R+ FST +T A + K
Sbjct: 165 SFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICK 201
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 204 VHGAAHGQIVHRHVTQGAITVD 269
+HG + G++ HRH+T I VD
Sbjct: 478 LHGVSGGKLAHRHLTSSNILVD 499
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 371 GKMEIPLLADYKKQISKDYDVLLDDGFA 288
G+ ++P Y +Q ++DYDVL D A
Sbjct: 341 GEQQMPYPEQYMQQSTQDYDVLADPNIA 368
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 341 YKKQISKDYDVLLDDGFALRGLFIIDRNGTL 249
Y++++ KD+ LLDD LF+I++ G +
Sbjct: 43 YRRRVLKDFSKLLDDEIEKIVLFMIEQQGLI 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,021,036
Number of Sequences: 37544
Number of extensions: 420677
Number of successful extensions: 1237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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