Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c08
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 275 3e-74
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 254 4e-68
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 56 2e-08
Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.6
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.6
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 3.6
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 3.6
Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical pr... 28 6.3
U88165-8|AAK21391.1| 581|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 28 8.4
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 28 8.4
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 28 8.4
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 28 8.4
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 28 8.4
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 8.4
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 8.4
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 8.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 8.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 8.4
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 275 bits (674), Expect = 3e-74
Identities = 129/191 (67%), Positives = 153/191 (80%), Gaps = 1/191 (0%)
Frame = -1
Query: 638 VQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAG 459
+ KPAP F AVV+GEF + LSD+ GKYVVLFFYPLDFTFVCPTE+IAFSD+A++F
Sbjct: 6 IGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKA 65
Query: 458 IDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALR 282
I+ V+ STDS FSHLAWIN PRK GGLG+M IP+LAD QIS+DY VL D+G A R
Sbjct: 66 INTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFR 125
Query: 281 GLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKP 102
GLFIID + LR +++NDLPVGRSVDETLRLV+AFQF +KHGEVCPAGW P +DTIKP
Sbjct: 126 GLFIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTP--GSDTIKP 183
Query: 101 NPKDSKEYFQK 69
K+S+EYF+K
Sbjct: 184 GVKESQEYFKK 194
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 254 bits (623), Expect = 4e-68
Identities = 123/227 (54%), Positives = 159/227 (70%), Gaps = 1/227 (0%)
Frame = -1
Query: 740 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDF 561
S V+ L R+V + A + + PK PA F TAVV+G+F + D+
Sbjct: 3 SSAVRALCRTVPTVATRQLSTSRALLSLRPLGPKNTVPA--FKGTAVVDGDFKVISDQDY 60
Query: 560 TGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKD 381
GK++V+FFYPLDFTFVCPTE+IA+ D+A +F + +V+ S DS FSHLAW+NTPRKD
Sbjct: 61 KGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKD 120
Query: 380 GGLGKMEIPLLADYKKQISKDYDVL-LDDGFALRGLFIIDRNGTLRHMSVNDLPVGRSVD 204
GGLG M+IPLLAD+ K+I+ + VL + G + RGLF+ID +GT+RH + NDLPVGRSVD
Sbjct: 121 GGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSVD 180
Query: 203 ETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQKAN 63
ETLR++KAFQF+DKHGEVCPA W+ D + TIKP SKEYF K N
Sbjct: 181 ETLRVLKAFQFSDKHGEVCPADWHED--SPTIKPGVATSKEYFNKVN 225
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 56.4 bits (130), Expect = 2e-08
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Frame = -1
Query: 572 LSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW-- 402
L ++ G+ +++LF +P DFT VC TEL A +F Q++ +S DS +H W
Sbjct: 22 LHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAK 81
Query: 401 -INTPRKDGGLGK-MEIPLLADYKKQISK-----DYDVLLDDGFAL--RGLFIIDRNGTL 249
IN+ + G + ++AD + I D D + +G L R + + + L
Sbjct: 82 DINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGPDKKL 141
Query: 248 RHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGW 135
+ + GR+ E LR+V Q K PA W
Sbjct: 142 KSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANW 179
>Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical
protein R09D1.4 protein.
Length = 410
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 761 LLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFN 582
+ T + S K+L+ + ++PA S TSTT++PK+ P F +V G F
Sbjct: 45 IATGSASSTRFKKLTTTTINPATSATTGNTSSATSTTKSPKIATKTP-FCKKRIV-GFFT 102
Query: 581 QLKLSDFT 558
+ ++ T
Sbjct: 103 DTQSTEIT 110
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 408 EMTELRVCGHSNHLTIDSSKVFSFITERYELC-RTYKCEIQWIEEQNYVFSREI*KFKLI 584
E+ +L G + +D + + ++C + ++ I++ EEQ Y+F E KL+
Sbjct: 1084 EIRKLEEAGDDQSIAVDPCPIPIENGQIVDMCEKCFEQHIKFTEEQKYMFENENIYVKLV 1143
Query: 585 ELSID 599
L+++
Sbjct: 1144 NLNVE 1148
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 408 EMTELRVCGHSNHLTIDSSKVFSFITERYELC-RTYKCEIQWIEEQNYVFSREI*KFKLI 584
E+ +L G + +D + + ++C + ++ I++ EEQ Y+F E KL+
Sbjct: 1084 EIRKLEEAGDDQSIAVDPCPIPIENGQIVDMCEKCFEQHIKFTEEQKYMFENENIYVKLV 1143
Query: 585 ELSID 599
L+++
Sbjct: 1144 NLNVE 1148
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 243 HVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRLEPGHQRRHHQAEPQGQ 88
H GE A GP +G+ P G RQ +G GR G Q PQG+
Sbjct: 209 HPGEMGAPGP-QGKQGPDG------RQGEKGADGRKPIGRPGPKGQRGPQGE 253
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Frame = -3
Query: 252 PASHVGERSARGP-------LRGRDAPPGQGLPVRRQARRGVPGRL-EPGHQRRHHQAEP 97
P G+ RGP L G DAPPG P R G PG+ PG + A
Sbjct: 183 PPGQPGQPGQRGPPGEPGALLPGGDAPPGPSGPPGRPGAPGQPGKAGSPGQDGSNGDAGV 242
Query: 96 QGQ 88
G+
Sbjct: 243 AGE 245
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 264 P*WHPASHVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGR 139
P +H S R P R PP Q P R ++ +PGR
Sbjct: 131 PRYHSGPREDRFSDRNPPREHSPPPPQRFPARERSPAYIPGR 172
>Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical
protein C07A4.2 protein.
Length = 417
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -2
Query: 448 R*LECPQTLSSVISHGSTLLGRTVDWEKWKFLCLLITKNRFQKIMMYYLMMGLH*EVCS* 269
R L PQTL++ + L G ++ W+ + T + Q I +G+ +
Sbjct: 314 RHLPSPQTLAAAVIQSFYLEGIGYNYSSWRPMSFFKTGHFTQLIWKNSRKIGVGVSIVKS 373
Query: 268 STVMAPCVT 242
S++ +PCV+
Sbjct: 374 SSIRSPCVS 382
>U88165-8|AAK21391.1| 581|Caenorhabditis elegans Hypothetical
protein F54C1.1 protein.
Length = 581
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 443 IGVSTDSEFSHLAWINTPRKDGGLGKMEIP 354
+G D +++ WI T D G G+M+IP
Sbjct: 37 VGEQLDENGNNITWIQTYLYDFGFGEMQIP 66
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 465 KVFSFITERYELCRTYKCEIQWIEEQNYVFSREI*KFKLIELSIDNC 605
K F RY C+ + W EE+ + + + K I S+D+C
Sbjct: 600 KAFDIEENRYVACKIHHVNKDWKEEKKANYVKHAMREKDIHKSLDHC 646
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 465 KVFSFITERYELCRTYKCEIQWIEEQNYVFSREI*KFKLIELSIDNC 605
K F RY C+ + W EE+ + + + K I S+D+C
Sbjct: 667 KAFDIEENRYVACKIHHVNKDWKEEKKANYVKHAMREKDIHKSLDHC 713
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 465 KVFSFITERYELCRTYKCEIQWIEEQNYVFSREI*KFKLIELSIDNC 605
K F RY C+ + W EE+ + + + K I S+D+C
Sbjct: 667 KAFDIEENRYVACKIHHVNKDWKEEKKANYVKHAMREKDIHKSLDHC 713
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -3
Query: 252 PASHVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRL----EPGHQRRHHQAEPQGQ 88
P G GP G + PPG + R G PG+ EPG + +A P G+
Sbjct: 156 PRGPTGPPGETGP-SGPEGPPGNPGRIGEHGREGYPGQQGIPGEPGKPGKLGEAGPNGR 213
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 465 KVFSFITERYELCRTYKCEIQWIEEQNYVFSREI*KFKLIELSIDNC 605
K F RY C+ + W EE+ + + + K I S+D+C
Sbjct: 667 KAFDIEENRYVACKIHHVNKDWKEEKKANYVKHAMREKDIHKSLDHC 713
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 488 FSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDV 309
F A++ + D + ++ SEF+HL +T K GK+ + + +++ ++ V
Sbjct: 618 FKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRLVAVLQSV 677
Query: 308 LLDDGFALRGLFIIDRNGT 252
+ AL + + D + T
Sbjct: 678 IRPAARALLDIHLNDHDAT 696
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 488 FSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDV 309
F A++ + D + ++ SEF+HL +T K GK+ + + +++ ++ V
Sbjct: 616 FKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRLVAVLQSV 675
Query: 308 LLDDGFALRGLFIIDRNGT 252
+ AL + + D + T
Sbjct: 676 IRPAARALLDIHLNDHDAT 694
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 488 FSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDV 309
F A++ + D + ++ SEF+HL +T K GK+ + + +++ ++ V
Sbjct: 616 FKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRLVAVLQSV 675
Query: 308 LLDDGFALRGLFIIDRNGT 252
+ AL + + D + T
Sbjct: 676 IRPAARALLDIHLNDHDAT 694
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 488 FSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDV 309
F A++ + D + ++ SEF+HL +T K GK+ + + +++ ++ V
Sbjct: 616 FKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRLVAVLQSV 675
Query: 308 LLDDGFALRGLFIIDRNGT 252
+ AL + + D + T
Sbjct: 676 IRPAARALLDIHLNDHDAT 694
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 488 FSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDV 309
F A++ + D + ++ SEF+HL +T K GK+ + + +++ ++ V
Sbjct: 616 FKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRLVAVLQSV 675
Query: 308 LLDDGFALRGLFIIDRNGT 252
+ AL + + D + T
Sbjct: 676 IRPAARALLDIHLNDHDAT 694
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,123
Number of Sequences: 27780
Number of extensions: 374502
Number of successful extensions: 1118
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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